barSeed - Barley Seed Development Database

Probe CUST_35751_PI390587928

Source Contig U35_410

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35751_PI390587928	Hv_44K_v2	GGAGCAGGAGTACTTCACCGACACCACCACCCTCTTCATCGTGGAGCTCATCCTCATCGG	454	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60073.1	740	2e-24	490 - 549	100	60 / 60	minus	ABC01519 ABC01529
MLOC	MLOC_60073.3	741	2e-24	476 - 535	100	60 / 60	minus	ABC01529
MLOC	MLOC_60073.2	1165	2e-24	490 - 549	100	60 / 60	minus	ABC01519 ABC01529
JLOC1	JLOC1_39142.1	1337	8e-25	614 - 673	100	60 / 60	plus
Harvest21	ABC45755	356	3e-25	165 - 224	100	60 / 60	plus
Harvest21	ABC01529	1038	3e-25	444 - 503	100	60 / 60	plus	ABC01529
Harvest35	U35_410	514	3e-25	455 - 514	100	60 / 60	plus
Harvest35	U35_153	1051	3e-25	455 - 514	100	60 / 60	plus

Contig Sequence (514 bp)

>U35_410 514 Hv_44K_v2
TGTTGGCTCAATTCCACTCCCACACCACGCACGCACGCGCGCGCCTCCCCCCGCTACAGG
CACAGCCGGCCAGCGAGCGCGCGCACTGGTGCAGCAACGATGGCGCTGGTCTCCTCCTCC
TCCGCCACCGCCGTCGCGGCGCTCCCCAGCAACGGGCTGGCCGGCGCCCGGACCTCCTTC
CTCGGCGCTGCCGGCAAGGCGGCCGCGCCGCGGCGCCCGAGAGGCCCATCTGGTTCCCCG
GGAGCACCCCTCCCCCGTGGCTTGACGGCAGCCTTCCCGGAGACTTCGGCTTTGACCCAT
GGGGTCTTGGATCCGACCCGGAGAGCTTGCGGTGGAACGTGCAGGCGGAGCTGGTGCACT
GCCGGTGGGCGATGCTGGGCGCGGCGGGCATCTTCATCCCAGAGCTGCTGACCAAGATCG
GCATCCTCAACACGCCGTCGTGGTACACCGCCGGGGAGCAGGAGTACTTCACCGACACCA
CCACCCTCTTCATCGTGGAGCTCATCCTCATCGG

Homology of Contig U35_410 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g38960.2	263	3e-69	protein\|chlorophyll A-B binding protein, putative, expressed
Brachypodium v1_2	Bradi1g23610.2	259	1e-71
Arabidopsis v10	AT3G61470.1	257	3e-64	\| Symbols: LHCA2 \| photosystem I light harvesting complex gene 2 \| chr3:22745736-22747032 FORWARD LENGTH=257