barSeed - Barley Seed Development Database

Probe CUST_35750_PI390587928

Source Contig U35_411

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35750_PI390587928	Hv_44K_v2	GTGTTTGTTTTTCTCTGATCCGCTTTGCAACAGCTTGTTGTTTGTTGGATTATTCTAAAA	1212	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_14945.1	608	9e-22	252 - 306	100	55 / 55	plus	ABC02670 ABC29512
JLOC1	JLOC1_10219.1	392	5e-22	252 - 306	100	55 / 55	plus
Harvest35	U35_411	1286	3e-25	1213 - 1272	100	60 / 60	plus

Contig Sequence (1286 bp)

>U35_411 1286 Hv_44K_v2
TCGAGCACTGTTGGCCTACTCACACAAACACAAGTTTCCATCCAGCATTCTCAGACCGAG
TGAGCCTACTTTTGGGAGCACGCAACGCATGGCTCGCATGGGGGCGTCGGTGCTTTCGAT
CCTGCTCGCCTCTTGCGCCCTGGCGGCGGCGAGCTTCGACAAGGAGTTCGACGTTACCTG
GGGTGACGGGCGCGGCAAGATCCTCAACAACGGCCAGCTCCTGACGCTGGGACTGGACAA
GGTCTCCGGCTCCGGGTTCCAGTCCAAGCACGAGTACCTCTTCGGCAAGATCGACATGCA
GCTCAAGCTCGTCCCCGGCAACTCTGCCGGCACCGTAACCGCCTACTACCTGTCGTCGCA
GGGGCCGACGCACGACGAGATCGACTTCGAGTTCCTGGGCAACGTCACCGGCGAGCCCTA
CACGCTGCACACCAACGTGTTCACGCAGGGGCAGGGCCAACGGGAGCAACAGTTCCGCCT
CTGGTTCGATCCCACCAACGACTTCCACACCTACTCCATCCTCTGGAACCCAAAGCACAT
CATCTTCATGGTGGACGACATGCCGATCAGGGACTTCAAGAACCTGGAGGGGAAGGGGAT
CGCGTTCCCCAAGAACCAGCCCATGCGGCTCTACTCCAGCCTCTGGAACGCCGACGACTG
GGCCACGCAGGGCGGCCGCGTCAAGACCGACTGGTCCCACGCGCCGTTCTCCGCCTCTTA
CCGTGGCTTCAAGGCCGACGCGTGCGTGGTGACCGCGGGCGGCCGGCCGCGCTGCGGCGC
CAGCATGGGCACGGAAGCGGCCCCGGGCACGGGCGCTTCCGGCGCGGCCGGCGAGTGGTA
CAACCAGGAGCTGGACCTGACGCTGCAGCAGCGGATGCGGTGGGTGCAGAGCAATTACAT
GATCTACAACTACTGCACTGACCCCAAGCGCGTCGCCAAGGGCGTCCCCGCCGAGTGCTC
CATGTAGTCCCCGTCCATCAAAAGCAAGGTAGCATTGGACCGTCCGTGTATACGTCGATC
GCCGGAGGAAGACGGCCGGGGATAGGGAAGATGGGGGCGTCTGTATTGTACTGTATGATA
AATAAGGACCAGTGAGGGGGGATAATGTGAAATGGAGCGGGTGGTAGATTCTTCTGTTTG
CTCCTTGTCACGTTCAGATCGTGTGTAATATATGTCTCATCTCGTTCTGTTCTTCAAAAA
AAAAAAAAAAAAGTGTTTGTTTTTCTCTGATCCGCTTTGCAACAGCTTGTTGTTTGTTGG
ATTATTCTAAAAAAAAAAAAAAAAAA

Homology of Contig U35_411 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g48200.1	291	7e-175	protein\|glycosyl hydrolases family 16, putative, expressed
Brachypodium v1_2	Bradi1g33840.1	294	2e-172
Arabidopsis v10	AT5G57550.1	284	3e-139	\| Symbols: XTR3, XTH25 \| xyloglucan endotransglucosylase/hydrolase 25 \| chr5:23305055-23306384 REVERSE LENGTH=284