barSeed - Barley Seed Development Database

Probe CUST_35748_PI390587928

Source Contig U35_413

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35748_PI390587928	Hv_44K_v2	AATGCTTCGGGGAGTTGAAAATAAGCATAGATCCGGAGATTCCCAAATAAGCCTGCTCAC	68	GeneList: darkmagenta MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	3.737	2.878	1.171	0.732	0.733	0.711
Raw	196282.000	194183.333	84030.467	76288.367	28360.267	30800.800

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
Harvest35	U35_413	684	3e-25	69 - 128	100	60 / 60	plus

Contig Sequence (684 bp)

>U35_413 684 Hv_44K_v2
CAAAAGAGGAAAGGCTTGCGGTGGATACCTAGGCACCCAGAGACGAGGAAGGGCGTAGCA
AGCGACGAAATGCTTCGGGGAGTTGAAAATAAGCATAGATCCGGAGATTCCCAAATAAGC
CTGCTCACCACGCCATTCCCGGCCGCGCGCTTCCCGATTCCGATCGCCGGACACCAACCA
CTTTCCCAAGTAGAGGGGCCGCCGCGGAGATGTCGGCGACGTGCGCGGCGGACCTGGGGC
CGCTGCTGGGTGCGGCGGCGGCGAACGCCACGGACTACCTGTGCAACAGGTTCGCCGACA
CCACGTCGGCGGTGGACTCCACGTACCTGCTCTTCTCGGCCTACCTCGTCTTCGCCATGC
AGCTCGGCTTCGCCATGCTCTGCGCGGGCTCCGTCCGGGCCAAGAACACCATGAACATCA
TGCTCACCAACGTGCTCGACGCCGCCGCCGGCGCGCTCTTCTACTACCTCTTCGGCTTCG
CCTTCGCCTTCGGCACCCCGTCCAACGGGTTTATCGGGAAGCACTTCTTCGGCCTCAAGG
ACATGCCGCAGACCGGCTTCGACTACAGCTTCTTCCTCTTCCAGTGGGCCTTCGCCATCG
CCGCCGCCGGCATCACCTCGGGCTCCATCGCCGAGAGGACGCAGNTCGTCGCCTACCTCA
TCTACTCGGCCTTCCTCACCGGGT

Homology of Contig U35_413 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g43070.1	499	6e-58	protein\|ammonium transporter protein, putative, expressed
Brachypodium v1_2	Bradi5g15360.1	496	2e-58
Arabidopsis v10	None