barSeed - Barley Seed Development Database

Probe CUST_35746_PI390587928

Source Contig U35_414

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35746_PI390587928	Hv_44K_v2	ACGGTTGATGTACTGCCTGGAATGGAATAAATCAACGTTCGCAAGGTTGAGCAGAAAAAA	797	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.145	5.684	1.955	0.843	0.340	0.286
Raw	190.766	696.700	225.801	148.198	22.270	20.588

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_72498.1	980	2e-23	825 - 882	100	58 / 58	plus	ABC00538 ABC00634
JLOC1	JLOC1_48220.1	1043	1e-23	824 - 881	100	58 / 58	plus
Harvest21	ABC00634	855	1e-23	785 - 844	98	59 / 60	plus	ABC00634
Harvest35	U35_414	868	3e-25	798 - 857	100	60 / 60	plus

Contig Sequence (868 bp)

>U35_414 868 Hv_44K_v2
ACCACTCACCAAGGCACCCAGACGAGATGAAGATATCCATCGCAGCAGCCGCTGTCCTCC
TCCTGGCCCTGGCAGCCACGGCTAGCGCGGTCACGTTCGACGTGACGAACGAGGCGTCGA
GCACAGCCGGCGGCCAGCGATTCGACAGGGAGTACGGCGCCGCCTACGCCAAGCAAGTGC
TCTCGGATGCTTCCTCCTTCACCTGGGGCATCTTCAACCAGCCGGACCCCTCAGACCGCA
GGCCCGCCGATGGCGACACCGTCACCCTCGCCGTCCGCGACACGAACGGCATCGCCTCCA
CCAGCGGCAGCACCATCGAGCTCAGCGCCCGCTCCGTCGGCGGTATTACCGGCGACAACC
TCAAGGAGCAGGTGGACGGGGTGCTGTACCACGAGGTGGTGCACGTGTGGCAGTGGGGGC
TGCAGGACTACCACGAGCACCACGGGATCTTCGAGGGGATCGCGGACTACGTGCGGCTCA
AGGCCGGGTACGTAGCGGCGAACTGGGTGAAGGAGGGCGGCGGCAGCCGGTGGGACGAGG
GATACGACGTGACGGCCAGGTTCCTGGACTACTGCGACTCGCGCAAGCCCGGGTTCGTGG
CGGAGATGAACGGCAAGCTCAAGGACGGCTACAACGACGACTACTTCGTGCAGATCCTCG
GGACGAGCGCGGACCAGCTGTGGAACGACTACAAGGCCAAGTACTCCCAGGGCTGATCCG
TTTCATGTTGCATCGCATGCATGTGTACCGGTCTACGTCTATGTACTGATATACTAGTAG
TATACTTGTATTACTACACGGTTGATGTACTGCCTGGAATGGAATAAATCAACGTTCGCA
AGGTTGAGCAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_414 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os10g34930.1	230	7e-100	protein\|secretory protein, putative, expressed
Brachypodium v1_2	Bradi3g29720.1	231	2e-101
Arabidopsis v10	AT2G15130.1	225	7e-64	Plant basic secretory protein (BSP) family protein \| chr2:6565154-6565831 FORWARD LENGTH=225