barSeed - Barley Seed Development Database

Probe CUST_35742_PI390587928

Source Contig U35_416

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35742_PI390587928	Hv_44K_v2	GCTCCATGGATGATGAGTCCTTCTGTAACAAGAGGGAATAAAAAGGTTGAATCTATGACC	1334	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.934	1.249	1.463	1.108	0.480	0.525
Raw	29095.500	56736.067	61495.467	71770.667	11117.647	13314.470

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11312.1	1638	2e-24	97 - 156	100	60 / 60	minus	ABC00455 ABC00788 ABC41276
MLOC	MLOC_11312.2	1484	7e-23	1 - 57	100	57 / 57	minus	ABC00455 ABC00788 ABC41276
JLOC1	JLOC1_7485.1	1906	8e-25	1371 - 1430	100	60 / 60	plus
Harvest21	ABC00455	1300	3e-25	1214 - 1273	100	60 / 60	plus	ABC00455
Harvest21	ABC00062	1491	3e-25	1306 - 1365	100	60 / 60	plus
Harvest21	ABC41276	405	6e-22	29 - 88	97	58 / 60	minus	ABC41276
Harvest35	U35_416	1415	3e-25	1335 - 1394	100	60 / 60	plus
Harvest35	U35_514	998	1e-23	718 - 774	100	57 / 57	plus
Harvest35	U35_52	607	8e-21	281 - 332	100	52 / 52	plus

Contig Sequence (1415 bp)

>U35_416 1415 Hv_44K_v2
TCGAGCACTGTTGGCCTGATGATCAGTCTCCGGTCTCCACCCATCTCAGCAAAAAAGAAG
CTAGCACAGCTCCACACACACCATGGCAGCCATGGCCACCACCGCCTCCAGCCTCCTCAA
GAGCTCCTTCTCCGGCGTCCGCCTCCCGGCGGCGGCCCGCACCCCGTCCTGCGTTGCCAC
CCCGCGCGCCGGCGCCATCTGCAACTCAATCTCCTCCTCCACTCCTCCCTATGACCTCAA
CGCCTTCAAGTTCAGCCCCATCAAGGAGTCCATCGTATCCCGCGAGATGACCCGCCGCTA
CATGACCGACATGATCACCTACGCCGACACCGACGTCGTCATCGTCGGCGCCGGGTCCGC
GGGGCTGTCCTGCGCGTACGAGCTCTCCAAGGACCCCTCCATCAGCATCGCCATCATCGA
GCAGTCCGTGTCCCCCGGCGGCGGCGCGTGGCTCGGCGGACAGCTCTTCTCCGCCATGGT
CGTGCGCAAGCCGGCGCACCTCTTCCTCGACGAGCTCAACATCGAGTACGACGAGCAGGA
GGACTACGTCGTCATCAAGCACGCCGCGCTCTTCACCTCCACCATCATGAGCCGCCTCCT
CGCGCGCCCCAACGTCAAGCTCTTCAACGCCGTCGCCGTGGAGGACCTCATCGTCAAGGA
GAACCGCGTCGCCGGAGTCGTCACCAACTGGGCGCTCGTCTCCATGAACCACGACACACA
GTCCTGCATGGACCCCAACGTCATGGAGGCCAAGGTCGTGGTGAGCTCCTGCGGCCACGA
CGGGCCCTTCGGTGCCACCGGGGTCAAGCGGCTCCAGGACATCGGCATGATCCAGGCGGT
GCCCGGGATGAAGGCGCTTGACATGAACACGGCCGAGGACGCCATCGTGCGCCTCACCCG
CGAGGTCGTCCCGGGCATGATTGTCACCGGCATGGAGGTCGCCGAGATCGACGGTGCCCC
GAGAATGGGCCCGACCTTCGGCGCCATGATGATCTCCGGCCAGAAGGCGGCGCACCTGGC
GCTCAAGGCCCTCGGCCGGCCGAACGGCATCGACGGGACGCTCAAGAACGTTACCCCGGC
GCTGCACCCGGAGATGATCCTGGCGGCGTCCAACAACGCCGACATCGTCGACGCCTAAGC
AACGAGCTGGTGTTTGGGGGCAACAAATCAATAAGATGGTTCGGTGAAACAGAGGATGCT
TAGGGACGAGGGCTTGCCTATGTGATTTGTCAGACTCGTGTTTAATTCCGATGTTATCTT
TAGTTTTCTTATGTTAGTGTATTTTGTTCATGTCACTGCCCGCCATGTGCTCTGCTCTGC
TCTGCCCCATGTCAGCTCCATGGATGATGAGTCCTTCTGTAACAAGAGGGAATAAAAAGG
TTGAATCTATGACCAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_416 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g34570.1	356	0.0	protein\|FAD dependent oxidoreductase domain containing protein, expressed
Brachypodium v1_2	Bradi1g25860.1	353	0.0
Arabidopsis v10	AT5G54770.1	349	4e-179	\| Symbols: THI1, TZ, THI4 \| thiazole biosynthetic enzyme, chloroplast (ARA6) (THI1) (THI4) \| chr5:22246634-22247891 FORWARD LENGTH=349