barSeed - Barley Seed Development Database

Probe CUST_35739_PI390587928

Source Contig U35_417

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35739_PI390587928	Hv_44K_v2	CATGACTCGGTTGTTCTTTCGTGTATGTACACATGATCTTATTCATTTACATGAATGACA	1426	GeneList: salmon MasterList: Structural_proteins_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	4.886	4.169	1.129	0.599	0.141	0.704
Raw	266.267	351.245	85.333	74.650	4.910	34.195

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4856.1	1042	2e-24	405 - 464	100	60 / 60	minus	ABC03588 ABC40887
MLOC	AK354486	1529	7e-23	1451 - 1510	98	59 / 60	plus	ABC03588 ABC40887
JLOC1	JLOC1_3078.1	2295	8e-25	1658 - 1717	100	60 / 60	minus
Harvest21	ABC31223	561	3e-25	497 - 556	100	60 / 60	plus
Harvest21	ABC03590	1125	3e-25	9 - 68	100	60 / 60	minus
Harvest21	ABC03587	867	3e-25	39 - 98	100	60 / 60	minus
Harvest21	ABC03588	1004	8e-21	937 - 988	100	52 / 52	plus	ABC03588
Harvest35	U35_31079	561	3e-25	497 - 556	100	60 / 60	plus
Harvest35	U35_417	1529	3e-25	1427 - 1486	100	60 / 60	plus
Harvest35	U35_245	1458	3e-25	1391 - 1450	100	60 / 60	plus
Harvest35	U35_496	837	6e-22	770 - 826	98	57 / 58	plus
Harvest35	U35_381	1004	8e-21	937 - 988	100	52 / 52	plus

Contig Sequence (1529 bp)

>U35_417 1529 Hv_44K_v2
ACACACCACCATTCAGAGGAACCACACACCACATCCACTTTATCTATCCATCGCTCGTTG
AGAGGTTCGGAAGCGGTGAAGCACAAGTGCAGCAACAGCTGCGAGAAAGCAGCAATGGCG
AGGCACAGCCTCCTTGCCGTGCTCCTCGTCGGGCTGCTCGCGGCCTCCGGCTTCAGCCTC
GCGGCCGCTGCTGGCCGGGGCCTCGTCGAGAAGCTCCCCGAGCCGGAGCCCAAGCCCACG
CCGTACCCGGAGCCCAAGCCTATGCCTAAACCTGAACCCATGCCGAAGCCGGAGCCCACA
CCTATGCCTAAGCCTGAACCCATGCCAAAGCCGGAGCCCAAACCTATGCCTAAGCCTGAA
CCCATGCCAAAGCCAGAGCCCAAGCCGGAACCCAAGCCGGAGCCGATGCCAAAGCCAGAG
CCTAAGCCAGAACCCAAGCCCGAGCCGATGCCTAAACCAGAACCGAAACCTGAGCCTGAG
CTATGCCTAAACCAGAACCGAAACCTGAGCCCAAACCTGAGCCCATGCCAAAACCTGAAC
CAAAGCCAGAGCCCAAACCCGAGCCAATGAAGCCAGAGCCTAAACCGATGCCGAAACCGG
AACCAAAGCCAGAGCCCAAGCCCGAGCCGATGCCGAAACCGGAACCAAAGCCAGAGCCCA
AGCCCGAGCCGATGCCAAAACCCGAACCAAAGCCAGAGCCTAAGCCCGAGCCGATGCCAA
AACCCGAACCAAAGCCAGAGCCCAAGCCCGAGCCGATGCCGAAACCCGAACCGAAGCCTG
AGCCCAAGCCTTACCCCATGCCCAAACCTGAGCCTAAGCCTGAGCCCAAACCAGAGCCGA
TGCCAAAACCCGAACCAAAGCCAGAGCCCAAACCAGAGCCGATGCCAAAACCCGAACCAA
AGCCAGAGCCCAAACCCGAGCCGATGAAGCCTGAGCCTAAACCGATGCCAAAACCCGAAC
CGAAGCCAGAGCCCAAGCCCGAGCCGATGCCAAAACCTGAACCCAAGCCAGAGCCGATGC
CAAAGCCGGAGCCTAAGCCCGAGCCGATGCCAAAGCCAGAGCCCAAGCCTTACCCAATGC
CAAAACCAGAGCCCAAGCCTCAACCCATGCCTAAGCCAGAGCCCAAGCCTGAACCCGAAC
CCAAGCCGGAGCCGCCTCCGAAGGGCAAGCCGCCGATGACGGACAATTGATGTGATGCTC
ACATATGACAGCCGAAGGAGGAGGAGATCGACCCCGTCCGGAGCCACGATGTGCTATTTC
CAGAATAAGTGGCATAGTATCCGGCTAGCGAGATAGTGATGATGCATCTTTTTTGCATTC
CTTGTATTCCATCATCCCTTTTTAGTTTCTCTTGTTCCATGCACCCATGATGATTATTAC
TACTTTGTAATTATCATTTGCGTGCTGGTATGCGTTCATCTGTGCACATGACTCGGTTGT
TCTTTCGTGTATGTACACATGATCTTATTCATTTACATGAATGACAATATGTGCGGTTTC
TAGTTAAAAAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_417 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None