barSeed - Barley Seed Development Database

Probe CUST_35727_PI390587928

Source Contig U35_424

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35727_PI390587928	Hv_44K_v2	AACCTCTGGGTGCCCTCCGCCAAGTGCTACTTCTCGATTGCGTGCTACCTCCACTCACGC	384	GeneList: black MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.261	0.182	0.725	1.563	2.324	2.350
Raw	637.679	621.533	2524.700	7296.190	4359.407	4812.277

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4225.1	1022	2e-24	838 - 897	100	60 / 60	plus	ABC02354
MLOC	MLOC_4225.3	267	2e-24	177 - 236	100	60 / 60	plus	ABC02354
MLOC	MLOC_4225.2	740	2e-24	556 - 615	100	60 / 60	plus	ABC02354
JLOC1	JLOC1_2600.3	649	8e-25	465 - 524	100	60 / 60	plus
JLOC1	JLOC1_2600.2	734	8e-25	550 - 609	100	60 / 60	plus
JLOC1	JLOC1_2600.1	1020	8e-25	836 - 895	100	60 / 60	plus
Harvest21	ABC02355	1899	1e-23	385 - 444	98	59 / 60	plus
Harvest21	ABC02354	416	1e-23	143 - 202	98	59 / 60	minus	ABC02354
Harvest35	U35_424	444	3e-25	385 - 444	100	60 / 60	plus
Harvest35	U35_280	1912	1e-23	377 - 436	98	59 / 60	plus
Harvest35	U35_279	416	1e-23	215 - 274	98	59 / 60	plus

Contig Sequence (444 bp)

>U35_424 444 Hv_44K_v2
ACACGTTCCTTCACTCGGCCCGGCTCCCCTCCCCCCTCCTCCCTCCTCCGGTTTCTGATC
GCGACCATGGGAACCCGCGGGCTTGCGCTGGCGCTCCTCGCCGCGGTGCTGCTGCTGCAA
ACCGTCCTCCCGGCGGCGTCCGAGGCGGAGGGCCTCGTGCGGATCGCGCTCAAGAAGCGC
CCCATCGACCGGAACAGCCGCGTCGCCACGGGCCTCTCCGGCGGCGAGGAGCAGCCCCTC
CTCAGCGGCGCCAACCCCCTGCGCTCCGAGGAGGAGGGCGACATCGTGGCCCTCAAGAAC
TACATGAACGCCCAGTACTTCGGGGAGATCGGCGTCGGCACGCCTCCGCAGAAGTTCACC
GTCATCCTCGACACCGGCAGCTCCAACCTCTGGGTGCCCTCCGCCAAGTGCTACTTCTCG
ATTGCGTGCTACCTCCACTCACGC

Homology of Contig U35_424 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi2g16160.1	506	2e-51
Arabidopsis v10	None