barSeed - Barley Seed Development Database

Probe CUST_35721_PI390587928

Source Contig U35_430

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35721_PI390587928	Hv_44K_v2	GATTGTTGCCGAGACGGATTGATGAAGATAGTAAATAAAGGTGAATGAATTCTTCAAGAA	1086	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.383	1.461	1.040	0.819	0.266	0.798
Raw	44.754	73.481	46.141	61.220	5.801	20.765

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368726	1151	2e-24	1090 - 1149	100	60 / 60	plus	ABC02951 ABC02952 ABC02957
MLOC	MLOC_67184.1	4237	7e-23	634 - 693	98	59 / 60	minus	ABC02951 ABC02952 ABC02957
MLOC	MLOC_67184.2	1348	7e-23	319 - 378	98	59 / 60	minus	ABC02951 ABC02952 ABC02957
JLOC1	JLOC1_44326.1	1734	4e-23	1224 - 1283	98	59 / 60	plus
Harvest21	ABC02952	988	1e-23	748 - 807	98	59 / 60	plus	ABC02952
Harvest35	U35_430	1161	3e-25	1087 - 1146	100	60 / 60	plus
Harvest35	U35_43531	544	1e-23	182 - 241	98	59 / 60	minus

Contig Sequence (1161 bp)

>U35_430 1161 Hv_44K_v2
TGCTATGCTATGCTCGGCCGCCGCGCGCACCGACCGCACTAACCACTGGCCAGCTAGCCT
TCTCGTCTCCTCCAAGAAGCAGAGCATCCTCATTCCTCAGCCTGCACCATCCATGGCGCG
CCGGGCTGCCGCGTGCGCCGTCGCCGTGGCCGTGGCCCTGCTGGCGGCAGTGGCGTCGTC
GTCGGCGGACGCGTGGCTGCACGAGGAGTTCGAGACGGAGGGCAACGTGCGGGCGGGCTA
CGACGCGCGGGGGCGGCAGGTAGCGTCCATCGTCCTCGACCGGCAGTCCGGCGGCGCCTT
CCGGTCCCGGCGCAGCTACCTCTACGGCCAGTTCAGCGTCCAGATGAAGCTCGTCCCCGG
CAACTCCGCCGGCACCGTCGCCTCCTTCTACCTGTCGTCGGGCAACGAGCCGGGGCACGA
CGAGATCGACATGGAGTTCATGGGCAACAGCACGGGCCAGCCGGTGGCGCTCAACACCAA
CGTGTGGGCCAACGGCGACGGCAAGAAGGAGCAGCAGTTCTACCTCTGGTTCGACCCGGC
CGCCGGCTACCACACCTACACCATCATCTGGAACGACCGGAACGTCATCTTCAAGGTGGA
CGACCTCTTCCTCCGCTGCTTCACGCGCCACGCCGACCTGCCCTACCCGGGCGCCAAGCC
CATGGCGGTGCACGCCACGCTCTGGGACGGCAGCTACTGGGCGACGCAGCAGGGGAGGGT
GAAGGTGGACTGGTCCGCGGCGCCCTTCGTCGTCTCCTACCGCGGCTACTCCGCCGACGC
CTGCGTGCCCGCCGGCGCCGGCCGCCCGCTCGCATGCCCCGCCGGCACCGACCGCTGGAT
GACGCGCCGGCCCAGCGCCGCCGAGCGCGGCACCCTCGACTGGGCCAGGAGGAACTACAT
GCACTACGACTACTGCGCCGACGGCTGGCGGTTCCCCAAGGGGTTCCCCGCCGAGTGCTC
CCGGGCATGATCTCGCTCCCTCTGATCGTCGGTCGATCGTGCATGTATACATTTCGGCAG
CCATCCATTGATCCATCCGCACTCTTCTTGATCTCGCTCTCCCTGTTTTCTCACCTGTCG
TATGGTGATTGTTGCCGAGACGGATTGATGAAGATAGTAAATAAAGGTGAATGAATTCTT
CAAGAAAAAAAAAAAAAAAAA

Homology of Contig U35_430 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g13920.1	291	1e-117	protein\|glycosyl hydrolases family 16, putative, expressed
Brachypodium v1_2	Bradi3g18590.1	281	1e-116
Arabidopsis v10	AT5G57550.1	284	7e-81	\| Symbols: XTR3, XTH25 \| xyloglucan endotransglucosylase/hydrolase 25 \| chr5:23305055-23306384 REVERSE LENGTH=284