barSeed - Barley Seed Development Database

Probe CUST_35715_PI390587928

Source Contig U35_9855

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35715_PI390587928	Hv_44K_v2	GGCTATTGTGGCATGTACATATGTACTGTATGGAGAATGATGACAAGTTGGGACAAAAAA	701	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	6.973	6.657	1.405	0.675	0.175	0.200
Raw	378.852	598.381	102.173	85.554	5.304	8.492

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_5165.1	2145	9e-22	67 - 121	100	55 / 55	minus	None
JLOC1	JLOC1_3305.1	1790	5e-22	1670 - 1724	100	55 / 55	plus
Harvest35	U35_9855	772	3e-25	702 - 761	100	60 / 60	plus

Contig Sequence (772 bp)

>U35_9855 772 Hv_44K_v2
ATTGTATCTGCGCGGAGGACTGGGTGTTGTGCAGAGTTTTCCACAAGAAGAAAGCCGACA
CGGAGTACGCCATGGACGGCGAGCAGGAGATCGTCGGCGGCATGGCTCGCAGCGCCGCTG
TCGTTAGCGGATCCAACTACGTCAGCTCCTCGTCCTGCCACGATCCGGATCAGTACCACC
ACTCGCCTGCGGCGGCCCTGTTCCCGCCCCTCGGCGCCGGCGGGCATCATTACCAGCTCA
CGTCCTGTGATAATCACCACCCCCTTGGCACCGCCGGCGTCTCCCTGAGCGACGTTGACG
CCTTCGCCGGTATGCCGCAGCTGCTAAACTACGACAGCATCGTTGACTTCAGCCAGCAAC
TCCAGGGCGGTGGCGCAGCGGCGGGTTTGAGAGACGGCGCCGGGGATCAGTGTGGTGGGC
CGCTGATGGACCTAGGGCTGGAGGTGCAGGAGGAGCACTACAACTACAACAGCTTGATGT
AGATGTGAATATATGATGTGGATCGGTGGGTGCTAGCTGCATGCTGCTATTGCTCGGCCA
TAGACGCTAGTGTGTATCTGGCCATCGTTATTCGTTTGTGATCTTGTGCAGATTTCCTTG
TTTATATATGCATGTAGTGTAGGGTACAAGCATATATAATACATACATATATACTATTGC
ATTTAGTTATATAAAGTTGATTAGGATATGTGCGAGAGCGCGGCTATTGTGGCATGTACA
TATGTACTGTATGGAGAATGATGACAAGTTGGGACAAAAAAAAAAAAAAAAA

Homology of Contig U35_9855 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None