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Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_35707_PI390587928Hv_44K_v2TCCTGCTTCGGTGCTTTGTAATTGTAACACCAATGTATTTGCACTGCTCTCAATTTGCTA453GeneList: thistle2
MasterList: None



Probe Values

3 dpa4 dpa5 dpa6 dpa7 dpa8 dpa
Normalized 0.7241.5983.1152.3880.7910.551
Raw 73.138260.968429.049515.69059.05246.035



Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCAK35927813562e-241248 - 130710060 / 60plus None
MLOCMLOC_58915.455012e-24989 - 104810060 / 60plus None
MLOCMLOC_58915.647002e-24984 - 104310060 / 60plus None
MLOCMLOC_58915.160202e-24993 - 105210060 / 60plus None
MLOCMLOC_58915.240312e-24993 - 105210060 / 60plus None
MLOCMLOC_58915.932862e-24363 - 42210060 / 60plus None
MLOCMLOC_58915.546302e-24989 - 104810060 / 60plus None
JLOC1JLOC1_38302.640428e-25984 - 104310060 / 60plus
JLOC1JLOC1_38302.549138e-25984 - 104310060 / 60plus
JLOC1JLOC1_38302.455028e-25988 - 104710060 / 60plus
JLOC1JLOC1_38302.245308e-25988 - 104710060 / 60plus
Harvest21ABC281315133e-25454 - 51310060 / 60plus
Harvest35U35_98655133e-25454 - 51310060 / 60plus



Contig Sequence (513 bp)

>U35_9865 513 Hv_44K_v2
GCCGCGCCGCCGGTCGGTACATGATGGCGTACGAGGGTTTGGATGGCAATGGCGGGGTGA
GCATTGGGCTGGCCGTGTCGGAGGACGGGCTCAACGGGTGGAGGCGGTGCAGTGAATCAC
CAGCGCTGCGCCCGTCGGAGGATGATGATGAGTGGGACGTCGGTGGGGTCGGCGCCCCGT
GCTTGGTGCAAATGGATGGGCCATATGATTGGAGACTCTATTACATGGGCGTAGGGAAGG
ACGGTGAGGCTGCAATCGGGATGGCATATTCAGAGGGTCAGGGTCTTCCGAGGTTCAACA
AGTGTGACGCTCTTCTCATGTAAGGTGAGGTGTTGCTGTGTATGTTTCAGGGAATGTTAG
TTGATGGTGAGCTTCTGCATGGCTCATTGGACAATGCTGATCAAGTCACCATGATAAAAA
TTTGATGTTTGTTTTACTTAGTGTCTTGATTCATCCTGCTTCGGTGCTTTGTAATTGTAA
CACCAATGTATTTGCACTGCTCTCAATTTGCTA



Homology of Contig U35_9865 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7None
Brachypodium v1_2None
Arabidopsis v10None