- Probe CUST_35706_PI390587928
- Source Contig U35_9866
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_35706_PI390587928 | Hv_44K_v2 | ATAACGATAGGCATATGTTTCCAACTGTAAAGTTTGTGAGTGACCTCTTCCATGTTCAAA | 499 | GeneList: brown MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 2.334 | 2.693 | 1.375 | 0.763 | 0.385 | 0.294 |
| Raw | 236.152 | 433.608 | 191.474 | 169.436 | 28.843 | 24.664 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | MLOC_77705.2 | 5870 | 7e-23 | 8 - 64 | 100 | 57 / 57 | minus | ABC21247 |
| MLOC | MLOC_77705.3 | 5874 | 7e-23 | 8 - 64 | 100 | 57 / 57 | minus | ABC21247 |
| MLOC | MLOC_77705.1 | 5091 | 7e-23 | 18 - 74 | 100 | 57 / 57 | minus | ABC21247 |
| Harvest21 | ABC21247 | 573 | 3e-25 | 500 - 559 | 100 | 60 / 60 | plus | ABC21247 |
| Harvest35 | U35_9866 | 573 | 3e-25 | 500 - 559 | 100 | 60 / 60 | plus |
Contig Sequence (573 bp)
>U35_9866 573 Hv_44K_v2 TACAAGTGCCATGAAAATACTAAGATGTGACATGATGATGTTCTCACATCAAGTTCCTTC ATACCGCATGACAAATGAAGGTGACAAACTCTGTGGTTACTGGGAACTTGATCCAGCATC CGTGCCTGAAAATTTCCTAGCTAGAAAATCAAAGTGAAGCAAAAGCTATATTGCTCACAG GATGAAGTCAATAGTGGATTGCTTATCAAAATTTACATTGTTGACAAAGCTGCAGCACTG AGATGGTTATTCTTACTGTTGGTTGTATCAAGTGTAGGCAAGTTAGGTTATTAGGGTATT AGGTTGCTATGCCACGTGATGTCAAGCACTCAGGTTTGGTCTTTCTTTATGTTGCCTTAT AAATGGTGTTCTGCATGGTTGGTCGTAACAACTTCTGTATGCAACTTTGTAACCCCGAGT ATTCTTGAAAAGAAATAGGTGGCAGTAGCATTCATTATGCTTACCCTCAGAAAGTTAGCT GCTTTCTGTCCAACCTTTCATAACGATAGGCATATGTTTCCAACTGTAAAGTTTGTGAGT GACCTCTTCCATGTTCAAAAAAAAAAAAAAAAA
Homology of Contig U35_9866 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |