barSeed - Barley Seed Development Database

Probe CUST_35702_PI390587928

Source Contig U35_9871

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35702_PI390587928	Hv_44K_v2	TGACAGCTGACTTTTGTATGTTGGTATCATGGTTTTGAATGTTATGCTTGTGCGAAAAAA	1233	GeneList: green MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.294	1.425	1.131	0.906	0.262	0.264
Raw	361.083	617.434	437.615	553.371	56.423	61.089

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37205.1	2260	3e-22	36 - 91	100	56 / 56	minus	None
MLOC	MLOC_37205.2	2672	3e-22	36 - 91	100	56 / 56	minus	None
MLOC	MLOC_37205.3	2164	3e-22	36 - 91	100	56 / 56	minus	None
JLOC1	JLOC1_24061.3	2725	1e-22	2586 - 2641	100	56 / 56	plus
JLOC1	JLOC1_24061.2	2502	1e-22	2363 - 2418	100	56 / 56	plus
JLOC1	JLOC1_24061.1	2260	1e-22	2121 - 2176	100	56 / 56	plus
Harvest35	U35_9871	1304	3e-25	1234 - 1293	100	60 / 60	plus

Contig Sequence (1304 bp)

>U35_9871 1304 Hv_44K_v2
CCCACTCTTCTGCTCGACATCTTAATGGCGGCCGACAAATTTGAGGTTCTTTCTTGCATG
TGGTATTGCAGTCAGTTGCTCACAAGCCTGCCTATGACCACAGAATCTGCACTGCTATAC
CTAGACCACCCATGTTCGCTTTCAATGGCTGCTGAAGTTCAGCGTGTGGTAGATGCAGCC
AAGGAATTCCTTGCTGAGAAATACAAGATTTTAGAAAAGTTTGAAGTAGTGATGAACATC
TCTCTTTCAGGAATCGAGGCCATCTTTTCGAGCACTGATCTACAAGTAGCATCTGAAGAT
GAGGTATATAACTTCTTCCTCAAGTGGGCCCGTGCACGATACCTAGAACCGGAGGAAAGG
CGCGAGATCTTGAGCTGTCGTTTACTTCCACTGGTACGCTTCAGTCATATGACATGTGCG
GCACTTCAGGACATCCTAGCATGCACTGATAATGACATAGACCATGAGCAAGTAAGTAAG
CACATCACTGAGGTACTTCTCCACAAAGCTTACCCAACCCAGATGGAAGATGCTCTTGTA
GCAGATGCATCAACTCTCGATTGGCAATCTGCTGAGCGAACTTACGGGTACAAGCATGTG
AAAACAGTTACGTTTGACCGACCTTACCCACAGGTTATAGTTTACATGGATCTAAAGCGC
GACGAGTGCTCCCGATTCTTCCCATCAGGAGTTATATTGTCGGACTGGTTCCATCTCGCA
GGTCAGAAATTCTATGTCATGGCAAACTGTGTAATGGATGAGCAGACACACTTGTACAGC
TTTTGCCTCTGGTTAGGGATATATGGAAATTCTATTTCAGGCTCGTTGTGTTTCGATATT
GAGTTTGCTGCAAGGACAAGATCGTCAGGAAAATTCTTGAGCAAGTACGGCGGTAGGCAC
ACATTCATCGGTCCTATATTGGAGGGATGCGATGATCTTTTTGGAGTTCCATGGTCGACG
TTCATTGCAGACGACAACCTTTTCATCGACGGTGTGCTGCATTTGAGAGTAGATCTGACT
GTGGTGGAGCAGCCTGAATTACAGACCTGCATGTGATACTGTGACCTGCTGTGATACTGT
GTGTTGAGCCCTGCATGTGATACTGTGAGCTGCCGCTGCAGCCAGGAAGTTTGATGTATT
GGCATTGTACGGGTACCCTGAATCATGTGTTGTTGTTGATCGGTTGCTACTGCAAGTCAG
TAGTAACATGTGTGTGTGTGTGTGTGCGTGTGATGACAGCTGACTTTTGTATGTTGGTAT
CATGGTTTTGAATGTTATGCTTGTGCGAAAAAAAAAAAAAAAAA

Homology of Contig U35_9871 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g16000.2	422	2e-138	protein\|E1-BTB1 - Bric-a-Brac, Tramtrack, and Broad Complex domain with E1 subfamily conserved sequence, expressed
Brachypodium v1_2	Bradi1g02890.1	431	5e-137
Arabidopsis v10	AT3G61600.1	561	1e-104	\| Symbols: ATPOB1, POB1 \| POZ/BTB containin G-protein 1 \| chr3:22795704-22797953 FORWARD LENGTH=561