barSeed - Barley Seed Development Database

Probe CUST_35700_PI390587928

Source Contig U35_9873

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35700_PI390587928	Hv_44K_v2	TTCAAGAGAGCGGAGGCGATGCTCTACATCGCCAACTTCGATTCGGAGGTCGATTACCTC	793	GeneList: floralwhite MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.195	0.410	1.914	1.768	1.048	0.867
Raw	2.925	15.693	66.597	93.561	20.999	18.855

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365248	2891	2e-24	1669 - 1728	100	60 / 60	plus	None
MLOC	MLOC_61591.2	2816	2e-24	167 - 226	100	60 / 60	plus	ABC09679
MLOC	MLOC_61591.1	3414	2e-24	961 - 1020	100	60 / 60	plus	ABC09679
JLOC1	JLOC1_40251.1	4439	8e-25	3155 - 3214	100	60 / 60	minus
JLOC1	JLOC1_40250.2	4437	8e-25	972 - 1031	100	60 / 60	plus
JLOC1	JLOC1_40250.1	4161	8e-25	1017 - 1076	100	60 / 60	plus
Harvest21	ABC22421	853	3e-25	794 - 853	100	60 / 60	plus
Harvest35	U35_9873	853	3e-25	794 - 853	100	60 / 60	plus

Contig Sequence (853 bp)

>U35_9873 853 Hv_44K_v2
GCAGTTCCAGCAGCAGGCAAGGATGAGCCCGCTGTCAAGCCCCGTCAATGAAGACATAAT
AGGGGACAACCGGGCGCCGGTGGGTGTCCCACCGCCAGGACCGCCGCCACCACCTCCACC
ACCAATGCCACCGAGCAAAGGCAACGGGAGCGCGCAAGCGGCACCTGCACCTCCAATGCC
GCCCCCTCTGCTGCCGCGAGCCGGCAACGGCAGCGGCTGGCTGCCGAGGCGGCTCTCGGA
GCGCCCCGCGCCCACGGTGATCAGAGCCTCGGCTGGCGCAGTCCACCCCGAGGAGTCGCC
GCAGTCGGAGGAGAAGGACGTGGACGCCGGCGCGGCTGCTCTACCAAAGCTGAAGCCGCT
GCACTGGGACAAGTTCCGCGCGAGCTCCGGCAGGCCGACGGTGTGGGACCAGCTCAAGGC
GAGCTCATTCCGAGTGAACGAGGAGATGATCGAGACATTGTTCGTCTCCAACTCGACGAG
GAGGATGCCCAAGAACGGATTCAAGGAGGCAAACGGCGCACCCTTCAACCAGGAGAACAA
GGTGCTCGACGCCAAGAAATCGCAGAACATCGCGATCATGCTACGGGCGCTGGACGCCAC
CAAGGAAGAAGTGTGCAAGGCCCTGCTTGATGGCCAGGCAGAGAGCCTTGGAACCGAGCT
GCTGGAGATGCTGCTGAAGATGGCCCCTACCAGAGAAGAAGAGCTCAAGCTGAGAGAGTA
CAGGGAGGATGCTCAGTCGAAGCTCGGCCCCGCCGAGAGCTTCCTCAAGGCGGTGCTCGG
GATACCGTTCGCGTTCAAGAGAGCGGAGGCGATGCTCTACATCGCCAACTTCGATTCGGA
GGTCGATTACCTC

Homology of Contig U35_9873 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g34180.1	789	2e-100	protein\|formin, putative, expressed
Brachypodium v1_2	Bradi4g35330.1	774	1e-105
Arabidopsis v10	AT3G25500.1	1051	1e-53	\| Symbols: AFH1, FH1, AHF1, ATFH1 \| formin homology 1 \| chr3:9251320-9254826 REVERSE LENGTH=1051