barSeed - Barley Seed Development Database

Probe CUST_35697_PI390587928

Source Contig U35_9877

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35697_PI390587928	Hv_44K_v2	TTTATTTAGTCTGACTCCAAGTTCTTCTGGAAAAGGAACACAGATACAAAGGCGGAATGC	822	GeneList: darkorange2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.014	1.001	1.349	1.200	0.767	0.655
Raw	104.716	148.727	191.615	254.752	60.718	55.444

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_70204.2	931	2e-24	777 - 836	100	60 / 60	minus	ABC20471
MLOC	MLOC_70204.3	1083	2e-24	449 - 508	100	60 / 60	minus	ABC20471
MLOC	MLOC_70204.1	1490	2e-24	856 - 915	100	60 / 60	minus	ABC20471
JLOC1	JLOC1_46580.3	1309	8e-25	96 - 155	100	60 / 60	plus
JLOC1	JLOC1_46580.2	1340	8e-25	96 - 155	100	60 / 60	plus
JLOC1	JLOC1_46580.1	1328	8e-25	96 - 155	100	60 / 60	plus
Harvest21	ABC19739	885	3e-25	823 - 882	100	60 / 60	plus
Harvest35	U35_9877	885	3e-25	823 - 882	100	60 / 60	plus

Contig Sequence (885 bp)

>U35_9877 885 Hv_44K_v2
CGAGGAACAAAGCCAAGCTAGAGGGGGAACTGTGGGACGAACGTATCTCAAGCTCATCCG
GACAGAATTCACATTTTGTATCTAAGGCAACACGTTTGTGGGAATCGATATTGGCTCGCA
AAGGCCAGCATGAGGTTTTAGCTTCCGGGCCAATTGAAGATCTTATAGCGCACCGTGAGC
ATAGGTACCGTATATCTGGATCGCAATTGCTAGCAGCAATGGATACGAGTTCAAGCGTTC
CACCTTCCGAATTACTATCAGCTCGAGCTGGTGAAACGTCTCAAATTTTGGACAAACAGG
AGCAGATTTCTTTATTCCAGGGAAAGGAAGAAGCTCTTCCAAGATTAGATGATAGGAATG
GGCGTGTCCAACAAACTGTTGACGTAGCTGAAATTCTTCGACGTTGGACTCATGCTTTGC
AGCGTATTCATAAACAATCTCTTCATTTGGCCAAGCAAATGATGGGGAGGGGCCCGAATT
ACTCCGCAGTGCGTTTGACAGCGAAACTAGTAGCCATGCCGACTCATTAACTGCAACATT
GGCCGAACATCGCCAGCATTTAGTCAGTATACAGGGCCTAATTAATCAACTCAAGGAAGC
TATTCCAGCAATGCAGCAGTCAATAACAGAACTTTCTGAAGAAGTGAATAGTGTACCTAG
TAATTCGATGGGTCAAACAAATTCCAGACAATTGTTGTCTGTCCAAAATACCGTGCTTGG
AAGACCAGAAGAAAGCAGCGGCGGAGTTTCAGAGATGACTTCCAAGCTCTGTTCAACACA
GATCAGCAAGGCTGGGAGTAGTCCTGCTCTAAAGCTACCTCCTTTATTTAGTCTGACTCC
AAGTTCTTCTGGAAAAGGAACACAGATACAAAGGCGGAATGCCCT

Homology of Contig U35_9877 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os02g22370.1	718	2e-120	protein\|expressed protein
Brachypodium v1_2	Bradi4g39430.1	712	1e-134
Arabidopsis v10	AT5G40740.1	741	3e-80	unknown protein; Has 30201 Blast hits to 17322 proteins in 780 species: Archae - 12; Bacteria - 1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses - 0; Other Eukaryotes - 2996 (source: NCBI BLink). \| chr5:16302229-16306371 REVERSE LENGTH=741