barSeed - Barley Seed Development Database

Probe CUST_35691_PI390587928

Source Contig U35_9883

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35691_PI390587928	Hv_44K_v2	GACAATGCTTTGTATACTCCCAACTTATCTGTTCTTATTTTCTTTCATCTCAGGGACATC	1291	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_59478.4	2361	2e-24	1935 - 1994	100	60 / 60	plus	ABC19075
MLOC	MLOC_59478.6	1545	2e-24	789 - 848	100	60 / 60	plus	ABC19075
Harvest21	ABC21244	1480	3e-25	1292 - 1351	100	60 / 60	plus
Harvest35	U35_9883	1480	3e-25	1292 - 1351	100	60 / 60	plus

Contig Sequence (1480 bp)

>U35_9883 1480 Hv_44K_v2
TCCTCTCTTTATCCCCCTCTCCCCGCGGGCGCCGCGCCGTCGAGCGCAAGACACCGCTGG
CTCGCCCGTCTCTCCGGTGGTTGGTTGCCCCCCTCTCCTTTCGCCTCGGCCCTTCTTCTA
GGCGATCGAGCCGGCCCCTTCTTCTTGCCGGGTTCCTCGGCGTCGAGTCCAAAGGTGCCG
TGTGAAGAAAAATATCAGGCAATCACCTAACGTGGCTGGAGTATGATCTGGATTGGCCTC
ACTTATTGCCAAGGAGCCTAAATAGCTGGTCTAGGAGCACTGCATAAGCATTTTGCTGAA
GACAAAGTTCTCAAAGGTTTCCAGGCTCAAAGAAATTTGATCCTCATATAAGCTCCAGAT
CATGGGTTGGTTAAACAAAATATTTAAAGGCTCAGTAAACAGAGTTTCAAGGGGTCATTA
TGATGGCCACTGGCACGAAGGCAACCCATCTGAGCATACCAGAGATGCATATAATGAGAG
CGACAGTGAAGATATAGCTCGTGCTATTGCATTATCCTTAGCTGAGCAAGATCCGAATAA
GGGAAAGGCTATTGATCCTGATTATAGTTTGGAGGAAGATGAGCAACTTGCACGAGCTCT
CCAGGAGAGCCTTAATACCGAGTCTCCTCCTCGTCAAAATGCTCCTGTTGAGAATGTTCC
ATCAGAGAGTATCCCAGCAAGGGAGCCGCATCAGCCTGTCTTCCCCTCAAGTGGATTCAG
GACTTGTGCTGGATGCAGAAAGCCAATTGGTCATGGGCGTTTTCTTAGTTGTATGGATGA
AGTTTGGCATCCTCAGTGCTTCAAATGTTATGCTTGCAATAAGCCCATATCAGAGTATGA
GTTTGCCATGCATGAAGACCAGCCATACCACANATCCTGCTATAAAGACTTTTTTCATCC
AAAGTGTGATGTCTGCAAGAACTTTATTCCGACAAATAAGAATGGCCTGATCGAATACCG
AGCACATCCTTTTTGGATGCAAAAGTACTGCCCTTCCCATGAAGACGATGGCACTCCTAG
GTGTTGCAGCTGTGAAAGAATGGAGCCAACGGACATCAAATATATTACATTAGATGATGG
GAGGAAACTGTGCTTGGAATGTCTCACTTCTGCAACAATGGACTCTCCCGAATGCCAACA
CCTTTACATGGATATTCAGGAATTTTTTGAAGGTTTGAATATGAAAGTAGAACAGCAAGT
TCCATTACTTTTGGTTGAGCGTCAGGCTCTGAATGAAGCGTTGGAAGCTGAGAAAAGTGT
AAGTTGGATGATAAGCTGGTTATTTTATGCAGACAATGCTTTGTATACTCCCAACTTATC
TGTTCTTATTTTCTTTCATCTCAGGGACATCACCTTCCTGAAACCAGGGGTCTATGCCTT
TCTGAAGAACAAATTGTCAAAACTATCTTAAGAAGACCAACAATTGGACCAGGAAACAGA
ATTATGGATATGATTACAGGACCATACAAGCTGGTCCGAC

Homology of Contig U35_9883 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g40490.1	487	0.0	protein\|LIM domain-containing protein, putative, expressed
Brachypodium v1_2	Bradi4g02760.5	488	0.0
Arabidopsis v10	AT1G19270.1	532	1e-111	\| Symbols: DA1 \| DA1 \| chr1:6663327-6665845 FORWARD LENGTH=532