barSeed - Barley Seed Development Database

Probe CUST_3568_PI390587928

Source Contig U35_28122

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3568_PI390587928	Hv_44K_v2	TGCCGATCATAATTTGATCGTAATTGTTGCATTGCCTCTATTTATCTTGGATCTGGATTG	485	GeneList: darkgreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.875	1.271	1.998	1.552	0.708	0.706
Raw	8.801	19.896	26.932	31.574	3.595	5.085

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_32710.1	1935	7e-23	1107 - 1166	98	59 / 60	plus	ABC01262 ABC01267 ABC33092 ABC44972
JLOC1	JLOC1_21287.2	1969	4e-23	1024 - 1083	98	59 / 60	plus
Harvest21	ABC26799	696	3e-25	486 - 545	100	60 / 60	plus
Harvest35	U35_28122	696	3e-25	486 - 545	100	60 / 60	plus

Contig Sequence (696 bp)

>U35_28122 696 Hv_44K_v2
GGCTTCTCAAAATTCATCTTCGAATAAGAATTCTAATGGCCCTGTTAATGGTCAGCCCAA
TGGTAGTCATAAAGAACCGGATACTACATGGGTCCACAAATGCTTCCAGGGAATATTGAC
TAATCAAACAAAATGTTTGAGATGTGAAACCGTCACTGATAGAGATGAAACATTTCTTGA
CTTGAGCCTGGATATAGAACAGAATAGTTCAATCACCAGCTGTCTTAAAAACTTCAGCTC
AACAGAAACTTTGAACGCTGAGGATAAGTTCTTCTGTGACAAATGCTGCAGGTATGTTAT
TCCATTTTTTTATTGCATGTTGTTTCCTCATGTGATATCTGGTATCTCCATTTCCTCCTG
GTTGACATTCTGTAACATGGCTACACTCAGTGGTCCACATCATGATTCAGTAGAGTAGCA
TATCAAACTTCCAAGTTCAGTTATTTTGCAAAAAATGTCCATGTCACAGGTATTCATTTT
CGTTTTGCCGATCATAATTTGATCGTAATTGTTGCATTGCCTCTATTTATCTTGGATCTG
GATTGAAGTTGTTATTAATTTCAGTTTACAAGAAGCACAGAAAAGAATGAAGATAAAGAA
ACAGCCAAACATCCTGGTAATCCATCTCAAGCGCTTCAAGTACATCGAGCAGCTCGGCCG
CTACAAAAAGCTGACATACCGAGTTGTTTTCCCGCT

Homology of Contig U35_28122 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value
Rice v7	None
Brachypodium v1_2	Bradi1g71830.1	367	5e-53
Arabidopsis v10	None