barSeed - Barley Seed Development Database

Probe CUST_35687_PI390587928

Source Contig U35_9887

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35687_PI390587928	Hv_44K_v2	ACTGTACCCAACTCAAGACTATGAGGGCTCTTTAGATTTGATACATATTACAGTAGCTCA	560	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37499.7	3456	2e-24	2745 - 2804	100	60 / 60	plus	ABC16778 ABC24048
MLOC	MLOC_37499.3	4181	2e-24	3141 - 3200	100	60 / 60	plus	ABC16778 ABC24048
MLOC	MLOC_37499.1	3759	2e-24	3037 - 3096	100	60 / 60	plus	ABC16778 ABC24048
MLOC	MLOC_37499.6	3779	2e-24	2991 - 3050	100	60 / 60	plus	ABC16778 ABC24048
MLOC	MLOC_37499.8	3438	2e-24	2650 - 2709	100	60 / 60	plus	ABC16778 ABC24048
MLOC	MLOC_37499.4	4063	2e-24	3034 - 3093	100	60 / 60	plus	ABC16778 ABC24048
MLOC	MLOC_37499.2	4579	2e-24	3756 - 3815	100	60 / 60	plus	ABC16778 ABC24048
MLOC	MLOC_37499.5	4050	2e-24	3010 - 3069	100	60 / 60	plus	ABC16778 ABC24048
JLOC1	JLOC1_24284.6	4199	8e-25	3005 - 3064	100	60 / 60	plus
JLOC1	JLOC1_24284.5	4192	8e-25	3009 - 3068	100	60 / 60	plus
JLOC1	JLOC1_24284.4	4221	8e-25	3038 - 3097	100	60 / 60	plus
JLOC1	JLOC1_24284.3	4250	8e-25	3056 - 3115	100	60 / 60	plus
JLOC1	JLOC1_24284.2	4239	8e-25	3056 - 3115	100	60 / 60	plus
JLOC1	JLOC1_24284.1	4232	8e-25	3038 - 3097	100	60 / 60	plus
Harvest21	ABC24048	570	3e-25	4 - 63	100	60 / 60	minus	ABC24048
Harvest35	U35_9887	623	3e-25	561 - 620	100	60 / 60	plus

Contig Sequence (623 bp)

>U35_9887 623 Hv_44K_v2
AAGAATGTTACTGCTCTGCGGATTGAAGGAAATCATGGGCTTTGTGGTGGGGCTCTGCAG
TTACACTTAATGGCATGTTCTGTTATGCCTTCAAATTCAACAAAGCACAATCTGTTTGCT
GTACTCAAAGTGTTAATCCCAATAGCCTGCATGGTCTCACTAGCTATGGCCATACTTCTC
TTATTGTTCTGGAGGAGGAGACATAAGAGAAAATCCATGTCTTTGCCATCACTTGATATA
AATCTTCCCAAAGTTTCTTTCAGTGATATTGCTAGAGCAACAGAGGGGTTCTCAACGTCC
AGCATAATTGGAAGAGGGAGATATGGTACTGTGTATCAAGGAAAACTATTTCAAGATGGA
AATTATGTTGCCATAAAAGTCTTCAACCTGGAGACAAGGGGAGCACCAAATAGCTTCATT
GCAGAATGTAATGTCTTAAGAAATGCACGGCATCGTAATCTGGTTCCTATACTAACCGCA
TGCTCAAGCATTGATTCTAACGGAAATGATTTCAAAGCTCTAGTGTATGAGTTCATGCCT
CGAGGAGACTTGCATGGATTACTGTACCCAACTCAAGACTATGAGGGCTCTTTAGATTTG
ATACATATTACAGTAGCTCAAAG

Homology of Contig U35_9887 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g07260.1	1014	3e-88	protein\|expressed protein
Brachypodium v1_2	Bradi4g24410.1	1020	6e-106
Arabidopsis v10	None