barSeed - Barley Seed Development Database

Probe CUST_35681_PI390587928

Source Contig U35_9895

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35681_PI390587928	Hv_44K_v2	TTCTCATCTTTGGTTGGCTTGTGTACTCACTGTAGAAGACATATGTCGTGTTAATATAAT	417	GeneList: brown MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.719	1.895	1.095	0.760	0.378	0.379
Raw	586.585	992.676	515.169	558.624	97.947	108.645

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK372475	3448	7e-23	3376 - 3435	98	59 / 60	plus	ABC20050
MLOC	MLOC_17847.2	3514	7e-23	3445 - 3504	98	59 / 60	plus	ABC20050
MLOC	MLOC_17847.3	3975	7e-23	3906 - 3965	98	59 / 60	plus	ABC20050
MLOC	MLOC_17847.4	3507	7e-23	3435 - 3494	98	59 / 60	plus	ABC20050
MLOC	MLOC_17847.5	3433	7e-23	3357 - 3416	98	59 / 60	plus	ABC20050
JLOC1	JLOC1_12326.2	3426	4e-23	3357 - 3416	98	59 / 60	plus
JLOC1	JLOC1_12326.1	3379	4e-23	3310 - 3369	98	59 / 60	plus
Harvest21	ABC20050	506	3e-25	31 - 90	100	60 / 60	minus	ABC20050
Harvest35	U35_9895	507	3e-25	418 - 477	100	60 / 60	plus

Contig Sequence (507 bp)

>U35_9895 507 Hv_44K_v2
GAGCAAACATGCAATTTGAGTTCTCATGATAATAACAATCATCTGAAGCGCAAGGCTGAG
GAAGAGCTGGAGCCACTTGAACTTGCTGGCCCGCCAGTTGGTGCTACCCGTGCATCAACA
TCAACTGTTCAAAGAAAGCCCCTCAGGCTTAGATTGTCAACTGTGCCGCAACCAAAACAA
GCTGAATGAAGCTCCCGAATCCAAGACCAGGCCGGCGCGTGAAGAATTGAAGATACTGAG
GATAGGACAATTCCAGTGAGAGCTTTCAATTTTTCATTTTATGATGTTCAAATGTAAACA
CATCCACTGTAGGCCATTGTATGCCAACTTTTGTGCCGTGGAAAAAATAAATAGAGAAAT
TGTTTGTAATTTATGACCTTTTTAACCATGGTACTTGCTGTTTGCGATCTTGGAATATTC
TCATCTTTGGTTGGCTTGTGTACTCACTGTAGAAGACATATGTCGTGTTAATATAATTTT
ATTTGCCAAAAAAAAAAAAAAAAAAAA

Homology of Contig U35_9895 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None