barSeed - Barley Seed Development Database

Probe CUST_35680_PI390587928

Source Contig U35_9896

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35680_PI390587928	Hv_44K_v2	AATTCTTAAAGCAACTGATTTCCCGAAATGGCATGAGGAAGGAGCTCCATGAGGCCATCT	559	GeneList: tan MasterList: Transcription_factors_Function_Probe_Module

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.489	0.775	1.644	2.172	1.064	0.920
Raw	31.845	77.443	145.380	297.947	52.819	49.736

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_75519.1	2068	2e-23	1113 - 1170	100	58 / 58	plus	None
JLOC1	JLOC1_50383.1	2097	1e-23	1133 - 1190	100	58 / 58	plus
Harvest21	ABC19729	1056	3e-25	560 - 619	100	60 / 60	plus
Harvest35	U35_9896	1056	3e-25	560 - 619	100	60 / 60	plus

Contig Sequence (1056 bp)

>U35_9896 1056 Hv_44K_v2
CCGATGGAGGGGCTGCACGACGCCGGCCCACCGCCGTTCCTTACGAAGACGTACGACATG
GTCGATGACCCCAACACCGACAGCGTCGTGTCGTGGAGCGCCGGCAACAACAGCTTCGTG
GTGTGGGATCCGCACGCCTTCGCCACCGTGCTGCTGCCCAGGCACTTCAAGCACAGCAAC
TTCTCCAGCTTCGTCAGGCAGCTCAACACCTATGGCTTCAGGAAGGTGGATCCTGACCGA
TGGGAGTTTGCCAATGAGGGTTTCCTACGGGGACAGAGGCACCTTCTGAAGAACATCAGG
CGTCGAAAACCTCCCGCTCATACTGCTTCAAATCAACAGTCCCTTGGATCTTACCTTGAG
GTGGGGCACTTTGGAAATGATGCAGAGATCGACCGGCTGAAAAGGGACAAGCAACTGTTG
ATGGCAGAAGTGGTGAAGCTAAGGCAAGAACAGCAGAACACGAAGGCGCATCTGAAAGCC
ATGGAGGATAGGCTACGTGGAACCGAGCAGAAACAGCAGCAGATGACGTCATTCATGGCG
CGTGTCTTGCGGAACCCTGAATTCTTAAAGCAACTGATTTCCCGAAATGGCATGAGGAAG
GAGCTCCATGAGGCCATCTCAAAGAAAAGGAGGCGCCGCATCGACGGTGGACCTGAAGCT
TATGACGTGGGTGCCAGTAGCAGCAGCCTGGAGCAAGAGTCGCCTGTTGTGTTTGATTCT
CATGGGTCAGTGGAACTTCTTGCCGATGTGTCGGTGCCGGTGGAACTCCTTGCTGACGGG
ATCCCACCTGATCTGGAAGGCTCGGTGGAACTCCTTGCTGACGGGATCCCACCTGACCTG
GAAGGTTCAGTGGCACTCCTTGCTGACGGGATCCCACCTGACCTGGAAGGCTCAGTGGAA
CTCCTTGTTGATGGGATTCCATCTGATCTCTGTGGCTCAGGCATCGACGCTAACGGCGTA
ACAGAGCCACAGGATTTTGGTCTTGGCACCTGTGAACCGCAGCAGAACAGAGTCCCGGGG
GTTGTTCCGTGATAGTTTCTGGGGAGGAGCTGCTGA

Homology of Contig U35_9896 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g08140.1	373	5e-151	protein\|heat stress transcription factor, putative, expressed
Brachypodium v1_2	Bradi1g55630.1	458	0.0
Arabidopsis v10	AT3G22830.1	406	5e-99	\| Symbols: AT-HSFA6B, HSFA6B \| heat shock transcription factor A6B \| chr3:8078981-8080895 FORWARD LENGTH=406