barSeed - Barley Seed Development Database

Probe CUST_35669_PI390587928

Source Contig U35_14907

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35669_PI390587928	Hv_44K_v2	CTCAGAATCTGGTACGACGTAGACACTTTTTCCATAGCTGATCAAACCTGAAACAAAAAA	987	GeneList: royalblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	5.363	4.329	1.314	0.720	0.509	0.567
Raw	80.147	109.286	26.676	24.267	4.695	6.385

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_47026.1	1453	5e-22	1122 - 1176	100	55 / 55	plus
Harvest21	ABC01644	1195	2e-22	988 - 1042	100	55 / 55	plus	ABC01644
Harvest35	U35_14907	1056	3e-25	988 - 1047	100	60 / 60	plus

Contig Sequence (1056 bp)

>U35_14907 1056 Hv_44K_v2
GCCGCCTCTTCTCCACTTCCCGCAGGGACATATAACCCGTGCCTCATCTGCAAGCCTGTG
GTGGACACAGGCAGTGCTAGCTCGCTCGCTCGATCGTCCTCTCCGCCCTGTAGCAGCCAG
CCACCATGGCCTCCACCGCGCTCTCCACCGCCTCCAACCCCACCCAGCTCTGCCGAACCC
GTGCGAGCTCGCTATGCAAGCCCGTCAAGGGCCTGGGCTTCGGCCGGGAGCGCATCCCGA
GGAACATCACATGCATGGCCGGCAGCATCTCCGCGGACCGCGTCCCGGACATGAGCAAGA
GGGAGCTGATGAACCTCCTGCTGCTGGGCGCCATCTCGCTCCCCACCTTCGGCATGCTCG
TCCCCTACGGCTCCTTCCTCGTCCCGGCCGGCTCCGGGAGCAACGCCGGAGGGGTCGCCG
CCAAGGACAAGCTCGGCAACGACATCCTCGTCGAGGATTGGCTCAAGACGCACGGCCCCA
ACGACCGCACGCTCGCCCAGGGGCTCAAGGGTGATCCTACCTACCTTGTGGTGGAGTCCG
ACAAGACCCTCGCCACCTACGGGATCAACGCCGTCTGCACGCATCTTGGCTGCGTCGTGC
CTTGGAACGCCGCCGAGAACAAGTTCCTCTGCCCTTGCCATGGATCCCAGTACAACAACC
AGGGCAAGGTTGTCCGTGGACCTGCACCTCTGTCGCTGGCCCTCGTTCACGCCGACGTCG
ACGACGGCAAGGTCGTCTTCGTGCCATGGGTGGAGACCGACTTCAGGACCGGCGAGAACC
CGTGGTGGAAATAAGCGACACAAGCTCCGGCAGCAAAGCTCACTCGTGTGATATGTTAAG
CCTCCTGCCAGTCCTAAGAACGCTGCTATAAGAGTACTCCTGCTATAAATGCACCTGTTT
CTTGTATCCAGTTATATGTATACAGTCTATGAAAGAAGAGAAACCTTTTCATTGCATAAA
AAAAAAAAAAAAATCATATTTTGAGGACTCAGAATCTGGTACGACGTAGACACTTTTTCC
ATAGCTGATCAAACCTGAAACAAAAAAAAAAAAAAA

Homology of Contig U35_14907 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g37030.1	226	5e-126	protein\|cytochrome b6-f complex iron-sulfur subunit, chloroplast precursor, putative, expressed
Brachypodium v1_2	Bradi1g24980.1	222	4e-135
Arabidopsis v10	AT4G03280.1	229	3e-99	\| Symbols: PETC, PGR1 \| photosynthetic electron transfer C \| chr4:1440314-1441717 FORWARD LENGTH=229