barSeed - Barley Seed Development Database

Probe CUST_35668_PI390587928

Source Contig U35_14909

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35668_PI390587928	Hv_44K_v2	CTGAGAAAATGGGACTTGACTACATGGATGTTGAAAGTCTTAAGAAGATGAACAAGAACA	298	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370613	876	2e-24	305 - 364	100	60 / 60	plus	ABC01939 ABC01945
MLOC	MLOC_34508.1	992	2e-24	485 - 544	100	60 / 60	minus	ABC01939 ABC01945
JLOC1	JLOC1_22261.1	1274	8e-25	395 - 454	100	60 / 60	plus
Harvest21	ABC01944	584	3e-25	395 - 454	100	60 / 60	plus
Harvest21	ABC01940	692	3e-25	299 - 358	100	60 / 60	plus
Harvest21	ABC01939	994	3e-25	296 - 355	100	60 / 60	plus	ABC01939
Harvest21	ABC27175	627	2e-21	575 - 627	100	53 / 53	plus
Harvest35	U35_14909	938	3e-25	299 - 358	100	60 / 60	plus
Harvest35	U35_14912	614	2e-21	562 - 614	100	53 / 53	plus

Contig Sequence (938 bp)

>U35_14909 938 Hv_44K_v2
GCCCTCTCTCTCGACCGACGCCGCCGCCGCGTCGACAAAGTCCGTAAGGGCGTCAACTGA
TCGGCGGCAGCCATGAGTAAGCTCCAAAGTGATGCTGTCAAGGATGCCATCACCCAGATT
GTTGGGGAGGCCAGAGAAAAGAAACGCAAGTTCACTGAGACTGTGGAGCTTCAGATTGGT
CTCAAGAACTACGACCCACAAAAGGATAAACGTTTCAGTGGCTCTGTGAAGCTGCCCCAT
ATCCCCCGCCCAAAGATGAGGGTGTGCATGCTTGGTGATGCCCAGCACGTTGACCAGGCT
GAGAAAATGGGACTTGACTACATGGATGTTGAAAGTCTTAAGAAGATGAACAAGAACAAG
AAGCTTGTTAAGAAGCTAGCCAAGAAGTACCATGCTTTCCTGGCATCAGAGGCCATAATC
AAGCAGATCCCTCGTCTCCTTGGCCCTGGTCTTAACAAGGCAGGCAAGTTTCCCACTCTG
GTAAGTCACCAGGAATCTCTTGAAGCCAAGGTGAACGAGACAAAAGCTACAGTCAAGTTC
CAGCTAAAGAAGGTTCTTTGCATGGGTGTTGCTGTGGGCAACTTGTCGATGGACGAGAAG
CAGATCCAACAAAACATCCAAATGAGCGTCAACTTCCTTGTGTCCCTCCTGAAGAAGAAC
TGGCAGAATGTGAGGTGCCTGTACGTGAAGAGCACCATGGGGAAGCGTGTACGGGTGTTC
TAAGTTGGTGTTCTCCAGTGGCTGTCCTGTCGACCCGAGCTTGTCTTTGGATTAGATCTG
TTTCACTGATACCAATTTTGTGTTTACCTAAGCGAACATCAACAAGTATTTTATCTTGTT
AGTCTTTTGTTGAACAGAAATCATGGGAGCAATAGAACTGCATTTTCTGTTAAAAAAAAA
AAAAAAAATTTTATATCAAAGATCTATGCGATCTTGAT

Homology of Contig U35_14909 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g44450.1	217	8e-125	protein\|L1P family of ribosomal proteins domain containing protein, expressed
Brachypodium v1_2	Bradi3g42800.9	217	2e-131
Arabidopsis v10	AT2G27530.1	216	5e-118	\| Symbols: PGY1 \| Ribosomal protein L1p/L10e family \| chr2:11763443-11764570 REVERSE LENGTH=216