barSeed - Barley Seed Development Database

Probe CUST_35666_PI390587928

Source Contig U35_14911

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35666_PI390587928	Hv_44K_v2	GATCTGGCAAAACTATGTACAGTAATGTAAGCTGTTTTGTGCAATTTGAACTGCAAAAAC	1216	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.596	1.671	1.163	0.881	0.313	0.327
Raw	634.226	1055.349	619.708	740.615	93.431	104.054

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370822	1178	2e-24	1107 - 1166	100	60 / 60	plus	ABC01939 ABC01945 ABC35138
JLOC1	JLOC1_47083.5	2327	2e-21	2246 - 2305	97	58 / 60	plus
JLOC1	JLOC1_47083.4	2398	2e-21	2317 - 2376	97	58 / 60	plus
JLOC1	JLOC1_47083.3	2728	2e-21	2647 - 2706	97	58 / 60	plus
JLOC1	JLOC1_47083.2	2718	2e-21	2637 - 2696	97	58 / 60	plus
JLOC1	JLOC1_47083.1	2464	2e-21	2383 - 2442	97	58 / 60	plus
Harvest35	U35_14911	1316	3e-25	1217 - 1276	100	60 / 60	plus

Contig Sequence (1316 bp)

>U35_14911 1316 Hv_44K_v2
ACCCCACACCACACCACACCAGGTAGCCCCCGCCGCTCCCTCTCCCGATCCACGCCGCCG
CTCATCTCACCGTGTTTCTTCCCCACACCACACCACACCAGGTGAATCGGCGACAGGCGA
ATCGACCCACCCCACCCCCCCGCGGCGAGCCATGAGTAAGCTGCAGACTGAGGCCCTCAA
GGAGGCCATCACCCAGGTGGTGGCGGATGCCAAGGAGAAGAACAGGAAGTTCACTGAGAC
CGTTGAGCTCCAGATCGGCCTCAAGAACTATGATCCGCAAAAGGACAAGCGTTTCAGCGG
CTCCGTCAAGCTGCCCCATGTCCCTCGCCCCAAGATGAGGGTCTGCATGCTTGGTGATGC
CCAGCACGTGGGAGAGGCTGAAAAGATTGGTCTGGATTCCATGGACGTTGAAGCTCTTAA
GAAGATGAACAAGAACAAGAAGCTTGTCAAGAGGCTTGCCAAGAAGTACCATGCTTTCTT
GGCCTCAGAGGCTATTATCAAGCAGATTCCACGTCTCCTTGGTCCTGGTCTCAACAAGGC
AGGAAAGTTCCCCACTCTGGTTTCTCACCAGGAGTCTCTGGAAGCCAAGGTGAATGAGAC
GAAAGCCACAATCAAGTTCCAGCTCAAGAAGGTGCTGTGCATGGGTGTCGCTGTTGGCAA
CCTGTCGATGGAGGAGAAGCAGATCCAGCAGAACATCCAGATGAGCGTCAACTTCCTGGT
TTCCCTGCTCAAGAAGAACTGGCAGAATGTGAGGTGTCTGTACATCAAGAGCACCATGGG
GAAGCCTGTCCGGGTGTTCTAAGCTCGTGCCCCTGCCCGCCCGTCTATATCGATGCTACC
TCCAATACTGGACCTCCTTACTATGTTCATGCTTAAATATGTCAGTGTCGTGTCGTAGTT
TTTATCGAATTTTGCACGTGTCCTGGTGAATGAAGATGATGAAAGACTGCTGCTGTTTCT
CCTAAGTTGCCATTCTGATGGAACAATATGCTCATCAAGATCATGCGAGAACCGGTTATA
TAATATGTTGTGGATGAAAGTTGTGTACCCTCAAAAAAAAAAAAAAAAATGTTGTGGATG
AAAGTTGTGTACCCTCATATGCTTGTCCACGATGCAATCTGTTTGTTGCCGTGCCTTTTT
AGTTCATATTTTCACATATGTAGGGCGCGAATAACTTAAGAGTGCTGTCAAAACTTGACG
CTTCTAACTGCTCCTTGATCTGGCAAAACTATGTACAGTAATGTAAGCTGTTTTGTGCAA
TTTGAACTGCAAAAACGTTTATTGTGCTTAAAAAAAAAAAAAAAAGCTCGAGGGGG

Homology of Contig U35_14911 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g44380.1	217	6e-127	protein\|L1P family of ribosomal proteins domain containing protein, expressed
Brachypodium v1_2	Bradi4g38510.5	217	7e-132
Arabidopsis v10	AT2G27530.1	216	6e-116	\| Symbols: PGY1 \| Ribosomal protein L1p/L10e family \| chr2:11763443-11764570 REVERSE LENGTH=216