barSeed - Barley Seed Development Database

Probe CUST_35665_PI390587928

Source Contig U35_14912

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35665_PI390587928	Hv_44K_v2	GACCAGGCTGAGAAAATGGGACTTGACTACATGGATGTTGAAAGTCTTAAGAAGATGAAC	554	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK370613	876	2e-24	298 - 357	100	60 / 60	plus	ABC01939 ABC01945
MLOC	MLOC_34508.1	992	2e-24	492 - 551	100	60 / 60	minus	ABC01939 ABC01945
JLOC1	JLOC1_22261.1	1274	8e-25	388 - 447	100	60 / 60	plus
Harvest21	ABC27175	627	3e-25	568 - 627	100	60 / 60	plus
Harvest21	ABC01944	584	3e-25	388 - 447	100	60 / 60	plus
Harvest21	ABC01940	692	3e-25	292 - 351	100	60 / 60	plus
Harvest21	ABC01939	994	3e-25	289 - 348	100	60 / 60	plus	ABC01939
Harvest35	U35_14912	614	3e-25	555 - 614	100	60 / 60	plus
Harvest35	U35_14909	938	3e-25	292 - 351	100	60 / 60	plus

Contig Sequence (614 bp)

>U35_14912 614 Hv_44K_v2
CAGGAATTGGCACGAGGGGAGAGAGGACAGGAGGCACAACCATATGGCAAGTGCCACTAG
GCGGCGCCGGCGCCGGACTCCTCTTCGAGCTTGCGCACGTAGGCGGAGAGCACGGCGACG
ACGTCCCTGGCCGGCGCCTGCAGCGTGGTGACGAGGGAGGTGGCCGGCCCATTGAGGGCG
CCGAGCAGCTTGGAGTAGACCTCGGCGCGGCTGGGCATGGTCTCGAGCGACTTGAACTCG
GCGGGCTCGTAGTACTTGCCCTCGAACACCGCCCCGATGAAGTCGTTGGTCTCGTCGACA
AAGTCCGTAAGGGCGTCAACTGATCGGCGGCAGCCATGAGTAAGCTCCAAAGTGATGCTG
TCAAGGATGCCATCACCCAGATTGTTGGGGAGGCCAGAGAAAAGAAACGCAAGTTCACTG
AGACTGTGGAGCTTCAGATTGGTCTCAAGAACTACGACCCACAAAAGGATAAACGTTTCA
GTGGCTCTGTGAAGCTGCCCCATATCCCCCGCCCAAAGATGAGGGTGTGCATGCTTGGTG
ATGCCCAGCACGTTGACCAGGCTGAGAAAATGGGACTTGACTACATGGATGTTGAAAGTC
TTAAGAAGATGAAC

Homology of Contig U35_14912 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os08g44450.1	217	4e-51	protein\|L1P family of ribosomal proteins domain containing protein, expressed
Brachypodium v1_2	Bradi3g42800.9	217	6e-55
Arabidopsis v10	None