barSeed - Barley Seed Development Database

Probe CUST_35650_PI390587928

Source Contig U35_14928

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35650_PI390587928	Hv_44K_v2	TAACTGGAGCTTGGAGATGCCGTCTTTACCTGCTGATAAGACCTCTTGTTATCTAAAAAA	547	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.567	1.227	1.061	0.853	0.538	0.560
Raw	63441.500	73181.067	59656.033	71399.133	16686.200	18818.433

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_15976.1	940	5e-22	758 - 812	100	55 / 55	plus
Harvest21	ABC02106	702	3e-25	636 - 695	100	60 / 60	plus	ABC02106
Harvest21	ABC02099	921	1e-23	851 - 910	98	59 / 60	plus
Harvest35	U35_14928	618	3e-25	548 - 607	100	60 / 60	plus
Harvest35	U35_14931	961	1e-23	891 - 950	98	59 / 60	plus
Harvest35	U35_36539	707	2e-22	143 - 197	100	55 / 55	minus

Contig Sequence (618 bp)

>U35_14928 618 Hv_44K_v2
CATCCGCACCGCCATTTCCCACGTCCAGAACCTCATCACCGGCGTCACCAAGGGCTTCCG
CTACAAGATGCGCTTCGTCTACGCCCACTTCCCCATCAACGCATCCATCACCGCAGCCAA
CCGCGGCATCGAGATCAGGAACTTCCTCGGAGAAAAAAAGGTAAGGAAAGTTGACATGCT
TGACGGTGTGACAATCCTGCGGTCCGAGAAGGTCAAGGACGAGATCGTCCTGGATGGCAA
TGACATTGAGCTTGTCTCCCGCTCTGCTGCCCTGATCAACCAGAAATGCCACGTGAAGAA
CAAGGACATCAGGAAGTTCCTGGACGGCATCTATGTCAGCGACAAGGGCGCCATCAAGGA
AGAGTAGTGTTGTCGCCACCTATCCTTCCGCAGCCCCTCTGTAGCCGGTAGCAGAAACTG
TCAGAAAGTTCTTGGAGCTTGTCGAAACAAAGATCAGAAACTGTTTTTTTGTTTTTTTTT
GGCTGGAGTGAATCAACAAAAAGTTTGCTGTGGTTTTGTACTGGATCGGTGTATCAGGGA
TGCCATGTAACTGGAGCTTGGAGATGCCGTCTTTACCTGCTGATAAGACCTCTTGTTATC
TAAAAAAAAAAAAAAAAG

Homology of Contig U35_14928 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g31180.1	191	3e-72	protein\|ribosomal protein L6, putative, expressed
Brachypodium v1_2	Bradi3g00640.1	190	1e-75
Arabidopsis v10	AT1G33140.1	194	3e-66	\| Symbols: PGY2 \| Ribosomal protein L6 family \| chr1:12023360-12024502 FORWARD LENGTH=194