barSeed - Barley Seed Development Database

Probe CUST_35649_PI390587928

Source Contig U35_14929

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35649_PI390587928	Hv_44K_v2	GCTCATTGGCCCAGTTCATAAGTTAAGTTTTCTTTTGTAGCTCATAGATTTTATTGGTTG	1683	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_44625.2	2000	7e-23	1071 - 1130	98	59 / 60	minus	ABC02100 ABC02103 ABC02106
MLOC	MLOC_44625.1	2125	7e-23	1075 - 1134	98	59 / 60	minus	ABC02100 ABC02103 ABC02106
Harvest21	ABC52736	655	3e-25	572 - 631	100	60 / 60	plus
Harvest35	U35_14929	1767	3e-25	1684 - 1743	100	60 / 60	plus

Contig Sequence (1767 bp)

>U35_14929 1767 Hv_44K_v2
GCGCCTCCTTCCCCTCCCCTTCCGCGCCGCCGCCGACCCACCCCCTCACTAACGAAGATG
AAGACCATCCTGGCGTCGGAGACGATGGAGATCCGGGAGGAGGTGTACGCGCCGGAGGTC
AGCGGCATCACGAAAGCCACAGCGGCCCTCGGATCGGTGACGGTCTCCCGCATGAGGTGC
TTCCCGTGCAAGGTGATGAACGCCATCCACTCCCGGTCGCTACGCGCCCAGTCGGCCAGG
GACGCCGTCGCAAGGCGGAACAGGTCGAACCGCGCCGAGTTGCCCGGGCGGGCGCCGTAG
CCCGTGCCCGCCAAAAACGTGGCGGACGACGCGACGAGCAGCAGTGGTGGCTGTGCTGTG
CCATCAAGTGGTACGACAGCTTCTTCCTCTCCATGCTCGCCACCAGCGTAATCATCGTCT
CCATCAACTGGAGGAGGTACCGCCTGTGCGCGCACCCGCTCCACATATGGATCGTCGTCG
ACTAAACCGCATCTTCGTCTTCCGCCTCCTCATGTTCCTCGACAACGGCCACGCTGCAGG
GATGGGACTGTAAGCCCCCCCTGCAGAGGTGGTGCGACGCGACATGCTTGGGTGCTTGCG
ATTTTTCTTTGTGCGTGCCGTGCTGGTCGTGGGTCAAAGCTTCCTAGGACACGCTGCGCC
GGATTTCGGTTGGATCTGTTTCCGTTAACACGGATGCTTTACTCAGCAGTACTACAACTT
TTGACAGTAGATTAATTCCACTTGAAAAATCTGGATCCTCAGTCACGGTCATAGCGATAC
TAGACAACATTTCCTTGGTGTCCACTGGTCACCTACATTGAGCAGAATAGAGCAGCAATT
TGCTTATGTTCCGGACCCAGTCGCTCGTGAGCACAAAAGTAGTAGCGTTGCTTGAGCATC
ATCGGGTTGTCGGGATTTTGGCACTGGTCACCTACTAGCACCGTTGTCCACATTTTGGCA
CTGGATGGATGCCATGGGATGATACTGCGGTTGATGATACTACAGTGTATGTGCGGATTT
GCTGCACGGATCTAGCTTTCTTTGTGCAAGTAGACGAACTTCTTGCGTGTGATTGACTGA
TTTCTGCTGTGGTTGCAGATGATGAAGGTGGACATGCTCGACGGGGTCACCATCTTGCGG
TCCGAGAAGGTCAAGGATGAGATCGTCCTCGACGGCAACGACATCGAGCTCGTCTCCCGC
TCCGCCGCCCTCATCAACCAGGTGAATCAAACAGGATACAAATCCTGTCTTTTCTCATGT
GCATGCTGATGCTGCCTGAATACTTTTTGGTTGATGTGATGCAAATGACCATAGATTATG
TCTCTGCTTATGCTCCTAGTATGATATAGATGTGCTTTGAAATCATTGCAATGTCTTTAG
AAGTCGGATGCCTGAGTGTTCTTTGCCTGTGATGCATACACGTCTTGTGCCGTTCAACAT
GTTTGCTTATGCTCCTGGTATGATACTTGTGCTGTCTTGCTGTTTGTTGAGCGTTGTGCT
GCATGATTAGATGCTAGTGCGCACTCCATGATTGGTCATTCTATTCACAGCGGCCATCTT
GCAGAGTTTGTACTGTTATTCGCTACTAGTTAAATCTGATAAGCTCATCTGTTTGTAATG
ATGTCCCATCTGTATGATTTTGGTATAAACGTGGTCGAAATGTACTTCCCTGCTGCAACA
CTTGCTCATTGGCCCAGTTCATAAGTTAAGTTTTCTTTTGTAGCTCATAGATTTTATTGG
TTGTTTCATGTTAGTGTAATAACCGAA

Homology of Contig U35_14929 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None