barSeed - Barley Seed Development Database

Probe CUST_35647_PI390587928

Source Contig U35_26901

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35647_PI390587928	Hv_44K_v2	CATTTCTTGCTTATGGGCTTCCATTTGTCATTTTTTGATACAAAGTACTGTACCATGGAT	552	GeneList: thistle2 MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.308	0.978	1.647	1.506	0.727	0.770
Raw	38.421	200.276	282.258	400.530	69.378	80.486

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_11868.2	919	2e-24	819 - 878	100	60 / 60	plus	None
MLOC	MLOC_11868.1	1776	2e-24	1690 - 1749	100	60 / 60	plus	ABC17153
JLOC1	JLOC1_7911.1	1848	8e-25	1712 - 1771	100	60 / 60	plus
Harvest35	U35_26901	657	3e-25	553 - 612	100	60 / 60	plus

Contig Sequence (657 bp)

>U35_26901 657 Hv_44K_v2
GCGTGCCATATGCATAATGAAGCACCCCATTCCTGACACCAAAGATTCTCACTCAGTGCA
GATTATCCTCCCAAAGAAACAGCTGAAGCGCAAATCAGACATGTACGTGTTCTGTTGCTC
GTACGCTCACAACGTTGCACCGAAAGGCAAGTTCATTGCCTTTGTGTCGACTGAAGCTGA
GACCGACAAGCCTGAGATCGAGCTGAAGCCCGGGATCGACCTGCTCGGCCCTGTGGAGGA
GACATTCTTCGACATCTATGATCGATACGAACCTGCTAATGCTCCGGCGGAGGACAACTG
TTTCGTGACAACTAGCTACGACTCCACCACCCATTTTGAGACAACGGTGAAGGATGTGCT
CGCCTTGTACAGCAAGATCACTGGAAAGGAACTTGATCTTTCTGTGGACCTGAATGCTGC
CAGTGCCGGCGAAAATGATGCCGCTTGAACATCTGTTACTACTAGTAGATACTTTCATTT
TTCTTTCTTTTTTTCTTCCTTTTTTTTCTTTATTCATCAATTCGTCCATAGATGGATCTG
TCCCGTTCGATCCATTTCTTGCTTATGGGCTTCCATTTGTCATTTTTTGATACAAAGTAC
TGTACCATGGATTTATATTATATATATACATCGAATAATCAAAAAAAAAAAAAAAAA

Homology of Contig U35_26901 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os03g16900.1	448	6e-93	protein\|rab GDP dissociation inhibitor alpha, putative, expressed
Brachypodium v1_2	Bradi1g66490.1	448	4e-94
Arabidopsis v10	AT2G44100.1	445	4e-77	\| Symbols: ATGDI1, AT-GDI1, GDI1 \| guanosine nucleotide diphosphate dissociation inhibitor 1 \| chr2:18241804-18244864 FORWARD LENGTH=445