barSeed - Barley Seed Development Database

Probe CUST_35646_PI390587928

Source Contig U35_26903

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35646_PI390587928	Hv_44K_v2	GCCAGACAGCTATATGTATGTATATGTATGGGACTACAATAAATCTATCTCTGTTTCCAT	981	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.502	2.120	1.632	0.930	0.414	0.369
Raw	25.599	60.280	38.183	34.042	3.725	3.698

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_4344.1	10122	7e-23	9270 - 9329	98	59 / 60	plus	ABC14185
MLOC	MLOC_4344.3	10727	7e-23	9876 - 9935	98	59 / 60	plus	ABC14185
MLOC	MLOC_4344.4	10387	7e-23	9536 - 9595	98	59 / 60	plus	ABC14185
JLOC1	JLOC1_2687.3	7761	4e-23	6882 - 6941	98	59 / 60	plus
JLOC1	JLOC1_2687.2	6867	4e-23	5988 - 6047	98	59 / 60	plus
Harvest35	U35_26903	1106	3e-25	982 - 1041	100	60 / 60	plus

Contig Sequence (1106 bp)

>U35_26903 1106 Hv_44K_v2
GCTTTATATATAACTACAGCAATGAGGTGTTGTCCTGTTGGGGGATGACGTGGTACAAAA
TCTCTATTGCACACAAGTCTGCTGAAGAGAATTTCCTTGTGGTAGTAGACCACAATCGAA
AGTATATAGCACTTTCTAATAAGGTCCGTCGACTATCTTTCGTCTTTGGTGACACAATAT
ATCCCAAGATACCAGAAAACATAACAAAGTCACAAATTCGGTCATTCAGATTTTTGTTTT
TATTCGAGTGTATGCCTTGTAATAGAGAGTTCAAGGGGGGGCGTGTTCTTAACCTTCGCC
TATCTGGTCATAATGGGGACCATGACCCTATAGACCTCACTGGGATTTCAGAACTGTTTC
AGCTCAGGTATTTAAAGATTACAAGTGATGTGTGCATAAAACTTCCGAACCAATTGCGAA
TGCTGCAATGTTTGGAAACGCTAGATATTATGGACTCTTCCTATTGATATATATCTGCTG
ATCTAGAGTATGCCTCGAGGACCTTGGTTAGGAGTCATCCGAGCAATCCTAGAATCAATT
TGCAATTGGTGGATAACGCGAGCTCAAAACAGGAACAACAACCATATGAGACTCTGGATA
TATCAAATTGGCATCCAAAGAAAAAACCGCACGTGATTGTGGAGGAAGCAGAAGAAGAAG
CTGACGAGAGCAGGATGAATGCATACCACAAGGGATTGTTGAGCCATGCTAGAACAGCTG
ATAAAAGGGTTTCAAGGTCAGGGGAGTCCTCTTCCTGCCAGGAAGTTCTAGAATTTGACT
GAAAGGCCGAGGACTCAAAGGGCAAGTAAAATAGAGAACAAGTGCAGTAGGAGGCTAACC
AAGGCCGTAGCAGCAGCCAGCAGGTAGCTGCTTCTATTTGAACTTGCAGCAGGAGCTGCT
TCTATTTGAACTTGCAGCAGGTAGCAGATTAGCTCAACTCGCACTAATTTTTCTTGGTAC
TATGTACAATTTCAGTTAGGTGCCAGACAGCTATATGTATGTATATGTATGGGACTACAA
TAAATCTATCTCTGTTTCCATACAGTTGCTGTATTACNCAGGGTGGTCGCCGATGCCTCC
CAACGTGTTAAAAAAAAAAAAAAAAA

Homology of Contig U35_26903 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None