barSeed - Barley Seed Development Database

Probe CUST_35643_PI390587928

Source Contig U35_26907

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35643_PI390587928	Hv_44K_v2	TTTTCCATTCTCAACGCAAAGGTGACGAGCCAGGAAGAGGTCGATCCAGCAGCTAGGCGC	40	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368356	2021	2e-24	42 - 101	100	60 / 60	plus	ABC40347
MLOC	MLOC_73198.1	1384	2e-24	942 - 1001	100	60 / 60	minus	None
JLOC1	JLOC1_48722.1	2821	8e-25	2374 - 2433	100	60 / 60	minus
JLOC1	JLOC1_48721.2	2023	8e-25	389 - 448	100	60 / 60	plus
JLOC1	JLOC1_48721.1	2019	8e-25	389 - 448	100	60 / 60	plus
Harvest35	U35_26907	726	3e-25	41 - 100	100	60 / 60	plus

Contig Sequence (726 bp)

>U35_26907 726 Hv_44K_v2
GTGCGTGCGTACCCGCGGGGCCTCTCGTCCCTCCTCCCTCTTTTCCATTCTCAACGCAAA
GGTGACGAGCCAGGAAGAGGTCGATCCAGCAGCTAGGCGCCAACGACCACCCTGGACGTC
CTCCCCAACGCGCGGCGTTTCCCGAGCGAGCAAGCAAGCGAGCAAGCGGCGAAACCATCG
CCACCGATTGGCGGCTTGCTTCGCTTGAGCCGAACCTCTTTAAGTCGCGCCTTGCCGCCG
TCTCTCTCTCTCTCCTCTCTCCTCGTGACGCCCTTGATAGCGCGGTGCCGTCGCTGCGAG
CGAAGGTGGGGTCGTCGTCGCTGCTGAGCGGGTGCTGGCCGATGGGCGCCGAGGTGGAGG
TCGTGGCCAGGGTGGCGCCCAGGGCGCCCGGCAGGAAGAGGACGTCCACCACGCTGCTCC
ACCTGCTCCAGCTCGACAACCCCGACGGCGTCTTCGTGTTCGCCGCCGCGGCGCCCAACA
AGCTGCCGCCGCCGTCGCCGGAGCCCGAGGCCGAGAGCCTCATCGACAAGATCGCCTCCT
GCTGCCGGGTCTTCACGTTCGCGGACGACGCCGACGCAAACGAGCGTGACGCCAAGCGGG
AGCGGCTCGAGGAGGTGCTCGCCGCGGTGCGCTCCAGCGGCAAGAACCAGCCGCCCGGGC
TGGACCACCTCGTCATGGTCGCGCTGGTCAAGATGCTCGCCGCCAACCTGTTCCGCACGA
TGCCTC

Homology of Contig U35_26907 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None