barSeed - Barley Seed Development Database

Probe CUST_35642_PI390587928

Source Contig U35_26909

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35642_PI390587928	Hv_44K_v2	TATTAGTAAGAGTGGCTCCAACACTTCCAGAGATTCAGGTGCAATCGTTGGCTTCCTTCT	847	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK251723.1	2721	2e-24	1781 - 1840	100	60 / 60	plus	ABC25159
MLOC	MLOC_21503.1	4296	2e-24	2533 - 2592	100	60 / 60	minus	ABC25159 ABC48683
JLOC1	JLOC1_14918.1	2837	8e-25	1876 - 1935	100	60 / 60	plus
Harvest21	ABC25616	929	3e-25	848 - 907	100	60 / 60	plus
Harvest35	U35_26909	929	3e-25	848 - 907	100	60 / 60	plus

Contig Sequence (929 bp)

>U35_26909 929 Hv_44K_v2
TCACTGACGGAGCTGATTGAGTTGGTTCCACAGCTGGTTGGCAGATTGTCGACTTCAGTG
GATAGCCATCCAGACAAGAAGAAGCTTTTCTCCGTGCAAGACTTCTTCCGGTATGCAGAA
ATCGAAGGGAAGCGTTTCTTTGAGGAATTGGATAGAGATGGTGATGGCCAAGTCACCCTA
GAAGATCTTGAAGTTGCAATGAGAAAGAGGCGATTGCCGCGGAGGTATGCTCGGGATTTG
TTACGGCGTACCAGAAGTAACATGTTTTCAAAGTCGATTGGGTGGAAACAATTTCTATCC
TTGATGGAGCAGAAGGAGGCAACAATACTCCGGGCATACACCACATTGTGTTTGAGCAAG
TCTGGGACGCTTCACAAGAATCAAATTGTTGAATCGTTAAAAGGTGCAGGCCTCCCGGCC
AATGAAGATAATGCTGCTGCCATGCTGCGCTATCTAAATGCAGATTCGGAAGGATCAATC
TCGTACAGCCATTTTCGCAGTTTCATGCTTCTACTTCCTTCAGAGCGCCTTGAAGATGAT
CCTCGGAACGTTTGGTTTGAAGCAGCTACATTGGTTGCTGTTCCCCCACCTGTAGAAATA
TCCACCGGAAATGTATTGAAGTCGGCTTTAGCTGGAGGTCTTGCTAGTGCCCTTTCTACC
TCTATGTTGCATCCTATTGATACAATGAAGACACGTGTCCAAGCATCTACGCTCTCATTT
CCAGAGCTAATTTCAAAACTTCCACAAATTGGGATTCAAGGACTGTATCGAGGTTCTATC
CCTGCAATTCTCGGACAGTTTTCAAGCCATGGTTTGAGAACAGGAATCTTTGAAGCAAGT
AAGCTCATATTAGTAAGAGTGGCTCCAACACTTCCAGAGATTCAGGTGCAATCGTTGGCT
TCCTTCTGCAGCACAATCCTTGGAACCGC

Homology of Contig U35_26909 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os12g01240.1	667	7e-160	protein\|mitochondrial substrate carrier family protein, putative, expressed
Brachypodium v1_2	Bradi4g45190.1	730	4e-176
Arabidopsis v10	AT2G35800.1	823	2e-138	mitochondrial substrate carrier family protein \| chr2:15044437-15048352 FORWARD LENGTH=823