barSeed - Barley Seed Development Database

Probe CUST_35641_PI390587928

Source Contig U35_14930

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35641_PI390587928	Hv_44K_v2	TATGTGAACATGCCTGGCGATGGATCCAATGTTGACGGCGCAACTAATTTGATAGATGGA	985	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.320	1.002	1.104	0.957	0.467	0.472
Raw	2914.783	3503.402	3353.227	4499.097	795.778	862.834

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249860.1	1085	9e-22	998 - 1059	97	60 / 62	plus	ABC02100 ABC02103 ABC02106
JLOC1	JLOC1_25283.1	1134	5e-22	918 - 979	97	60 / 62	plus
Harvest21	ABC02103	1049	3e-25	986 - 1045	100	60 / 60	plus	ABC02103
Harvest35	U35_14930	1049	3e-25	986 - 1045	100	60 / 60	plus

Contig Sequence (1049 bp)

>U35_14930 1049 Hv_44K_v2
GGCACAGCACAGCACCGCCGCCGCCGCACCACCACTCCACCCCCACCGCCGCCGAGGAGG
AAGAAGCAGCGTCAGGCGAAGATGAAGACGATCCTTGCGTCGGAGACGATGGATATCCCG
GAGGAGGTGACGGTGAAGGTGTCTGCGAAGATGATCTCGGTGACGGGTCCCCGGGGCACC
CTGACCCGCAACTTCAAGCACCTCAACCTCGACTTCCAGCTGCAGGATGGCGGCCGGAAG
CTCAAGGTTGACGCCTGGTTCGGCACCCGCCGCACCATGGCCGCCATCCGCACCGCCATC
TCCCACGTCCAGAACCTCATCACCGGCGTCACCAAGGGCTTCCGATACAAGATGCGCTTC
GTCTACGCCCACTTCCCCATCAACGCATCCATCACCGCAGCCAACCGCGGCATCGAGATC
AGGAACTTCCTCGGAGAAAAAAAGGTAAGGAAAGTCGACATGCTTGACGGTGTGACGATC
CTGCGGTCTGAGAAGGTCAAGGATGAGATTGTCCTTGATGGCAACGACATTGAGCTCGTC
TCTCGCTCTGCTGCCTTGATCAACCAGAAATGCCACGTGAAGAACAAGGACATCAGGAAG
TTTTTGGATGGTATCTACGTTAGCGACAAGGGCGCCATCAAGGAAGAGTAGGGGTGCGAC
CTATCTGCCGCAAGCCCTTTGTAGCTGGTAACAGAAACTGTCCTAGAGGAGGGTGGGTGT
TTTTTTGGGGCAATCACATGGGTTGGCTGCAATTTGTACTGGAGATAGATCAGGGATGTC
CTGGAACTGGAGAAGGGGGTTCCTTGAAGATGTATATTTCACCGGTTGATATGACGTCTT
GTTATCTGCCGCTATGTTTTGTTTGCTTAGGCATGCCAAAGGGAGAAGAACAAGTGATTG
ACGTGTTTTAAGCTGAAATAGGTAAACTCGGAGCAAGGCACTTGAAATTTCATCCCTAGT
CAGGCAAGGTTCATACAATCATTTTTATGTGAACATGCCTGGCGATGGATCCAATGTTGA
CGGCGCAACTAATTTGATAGATGGATTGA

Homology of Contig U35_14930 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g31180.1	191	5e-114	protein\|ribosomal protein L6, putative, expressed
Brachypodium v1_2	Bradi3g00640.1	190	2e-123
Arabidopsis v10	AT1G33140.1	194	4e-101	\| Symbols: PGY2 \| Ribosomal protein L6 family \| chr1:12023360-12024502 FORWARD LENGTH=194