barSeed - Barley Seed Development Database

Probe CUST_35640_PI390587928

Source Contig U35_14931

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35640_PI390587928	Hv_44K_v2	GTAACTGGAGCTTGGAGATGCCGTCTTTACCTGCTGATAAGACCTCTTGTTATCAAAAAA	889	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.633	1.243	1.054	0.874	0.571	0.565
Raw	68768.800	77942.233	61332.733	76623.100	18468.367	19623.500

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK250594.1	941	3e-21	888 - 941	100	54 / 54	plus	ABC02100 ABC02103 ABC02106 ABC37839
JLOC1	JLOC1_15976.1	940	2e-21	757 - 810	100	54 / 54	plus
Harvest21	ABC02099	921	3e-25	850 - 909	100	60 / 60	plus
Harvest21	ABC02106	702	1e-23	635 - 695	98	60 / 61	plus	ABC02106
Harvest35	U35_14931	961	3e-25	890 - 949	100	60 / 60	plus
Harvest35	U35_14928	618	1e-23	547 - 607	98	60 / 61	plus
Harvest35	U35_36539	707	6e-22	145 - 198	100	54 / 54	minus

Contig Sequence (961 bp)

>U35_14931 961 Hv_44K_v2
TCGAGCACTGTTGGCCTAGATCTCATTCTCGCCTCGCGCGCCGCCGCCGCCGCCGCCCGC
ACAGCACAGCCGCCACCCCCCGCCGCCGTCGAGGAAGAAGAAGAAGAAGAAGAAGAAGAG
AGGAGCGACAAATCCAAATCCGGCGAGGATGAAGACGATCCTTGCGTCGGAGACGATGGA
TATCCCGGAGGAGGTGACGGTGAAGGTGTCTGCGAAGATGATCTCGGTGACGGGTCCCCG
GGGCACCCTGACCCGCAACTTCAAGCACCTCAACCTCGACTTCCAGCTGCAGGATGGCGG
CCGGAAGCTCAAGGTTGACGCCTGGTTCGGCACCCGCCGCACCATGGCCGCCATCCGCAC
CGCCATCTCCCACGTCCAGAACCTCATCACCGGCGTCACCAAGGGCTTCCGATACAAGAT
GCGCTTCGTCTACGCCCACTTCCCCATCAACGCATCCATCACCGCAGCCAACCGCGGCAT
CGAGATCAGGAACTTCCTCGGAGAAAAAAAGGTAAGGAAAGTTGACATGCTTGACGGTGT
GACAATCCTGCGGTCCGAGAAGGTCAAGGACGAGATCGTCCTGGATGGCAATGACATTGA
GCTTGTCTCCCGCTCTGCTGCCCTGATCAACCAGAAATGCCACGTGAAGAACAAGGACAT
CAGGAAGTTCCTGGACGGCATCTATGTCAGCGACAAGGGCGCCATCAAGGAAGAGTAGTG
TTGTCGCCACCTATCCTTCCGCAGCCCCTTTGTAGCCGGTAGCAGAAACTGTCAGAAAGT
TCTTGGAGCTTGTCGAAACAAAGATCAGAAACTGTTTTTTTTTGGCTGGAGTGAATCAAC
AAAAAGTTTGCTGTGGTTTTGTACTGGATCGGTGTATCAGGGATGCCATGTAACTGGAGC
TTGGAGATGCCGTCTTTACCTGCTGATAAGACCTCTTGTTATCAAAAAAAAAAAAAAAAA
A

Homology of Contig U35_14931 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g31180.1	191	2e-114	protein\|ribosomal protein L6, putative, expressed
Brachypodium v1_2	Bradi3g00640.1	190	8e-124
Arabidopsis v10	AT1G33140.1	194	1e-101	\| Symbols: PGY2 \| Ribosomal protein L6 family \| chr1:12023360-12024502 FORWARD LENGTH=194