barSeed - Barley Seed Development Database

Probe CUST_35639_PI390587928

Source Contig U35_14932

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35639_PI390587928	Hv_44K_v2	GGTTAAAACAGGACATGAATGTGCTGCTGTGTTTTCTATTGTTAAATTATTTGGCTAAGC	897	GeneList: turquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.261	1.257	1.164	0.952	0.531	0.456
Raw	50795.600	77430.433	63945.167	78907.233	16126.100	15098.100

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK249800.1	955	2e-24	892 - 951	100	60 / 60	plus	ABC02100 ABC02103 ABC02106
MLOC	MLOC_44625.2	2000	2e-24	293 - 352	100	60 / 60	minus	ABC02100 ABC02103 ABC02106
MLOC	MLOC_44625.1	2125	2e-24	297 - 356	100	60 / 60	minus	ABC02100 ABC02103 ABC02106
JLOC1	JLOC1_28932.1	1247	8e-25	851 - 910	100	60 / 60	plus
Harvest21	ABC02100	955	1e-23	871 - 930	98	59 / 60	plus	ABC02100
Harvest35	U35_14932	1010	3e-25	898 - 957	100	60 / 60	plus

Contig Sequence (1010 bp)

>U35_14932 1010 Hv_44K_v2
CTCCCTCGATCAAACCCTCGCCTCCTCCCCCCTCCGCGCCGCCGCCGCCGCCGCCGCCAC
CTCGCCCCAGCCCACCCCCTCACCGGCGAAGATGAAGACCATCCTGGCGTCGGAGACGAT
GGACATCCCGGAGGAGGTGACGGTGAAGGTGTCGGCCAAGATGATCTCGGTGACGGGGCC
GCGCGGCACCCTGACCCGCAACTTCAAGCACCTCAACCTCGACTTCCAGCTGCAGGACGG
CGGGCGCAAGCTCAAGGTGGACGCCTGGTTCGGCACCCGCCGCACCATGGCCGCCATCCG
CACCGCCATCTCCCACGTCCAGAACCTCATCACCGGCGTCACCAAGGGCTTCCGCTACAA
GATGCGCTTCGTCTACGCTCACTTCCCCATCAACGCCTCCATCACCGCCGCCAACCGGGG
CATCGAGATCCGCAACTTCCTCGGCGAGAAGAAGGTGAGGAAGGTGGACATGCTCGACGG
GGTCACCATCTTGCGGTCCGAGAAGGTCAAGGATGAGATCGTCCTCGACGGCAACGACAT
CGAGCTCGTCTCCCGCTCCGCCGCCCTCATCAACCAGAAATGCCACGTCAAGAACAAGGA
TATCAGGAAGTTCTTGGATGGTATCTACGTCAGCGACAAGGGCGCCATCAAGGAGGAGTA
GAGTGCAAAAAATTGTCCCAGAAGCTGTGTTTCTGCCTCCGTGTTTCATCGTCTTTGTGT
TGTCGTTGTCGTGATTTTGAACTTCTTCTAGACTGAATTTTGTAGTGGAGTTAATTAGGG
ATGTGCTATGGAACATGTTATCTCTATTATCCTGCAACATATTGTCGCCGAGAGAATCGG
TACGACGCTTATCTACCCCTAAAGGCTGAAGACTTAAGGAAAAAAAAAAAAATTTGAGGT
TAAAACAGGACATGAATGTGCTGCTGTGTTTTCTATTGTTAAATTATTTGGCTAAGCATC
TAAAAAAAAAAAAAAAAATTTGGTTATGCATGCAAAAAAAAAAAAAAAAA

Homology of Contig U35_14932 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os09g31180.1	191	3e-114	protein\|ribosomal protein L6, putative, expressed
Brachypodium v1_2	Bradi3g00640.1	190	2e-123
Arabidopsis v10	AT1G33140.1	194	2e-101	\| Symbols: PGY2 \| Ribosomal protein L6 family \| chr1:12023360-12024502 FORWARD LENGTH=194