barSeed - Barley Seed Development Database

Probe CUST_35638_PI390587928

Source Contig U35_14933

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35638_PI390587928	Hv_44K_v2	AAGGATGTCACTGCCCAAATTGTTTATGCTACCATTGCTGGTGATATCGTGATGGCTGCT	352	GeneList: tan MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.579	0.666	1.805	2.323	1.041	1.050
Raw	2959.027	5373.050	12519.870	26162.693	4083.257	4466.767

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_37450.2	938	2e-24	194 - 253	100	60 / 60	plus	ABC01450 ABC01453 ABC01454 ABC34632
MLOC	MLOC_37450.1	1600	2e-24	761 - 820	100	60 / 60	plus	ABC01450 ABC01453 ABC01454 ABC34632
JLOC1	JLOC1_24254.1	1553	8e-25	323 - 382	100	60 / 60	plus
Harvest21	ABC45018	483	3e-25	231 - 290	100	60 / 60	plus
Harvest21	ABC01453	1228	3e-25	246 - 305	100	60 / 60	plus	ABC01453
Harvest21	ABC01451	672	3e-25	344 - 403	100	60 / 60	plus
Harvest35	U35_14933	426	3e-25	353 - 412	100	60 / 60	plus

Contig Sequence (426 bp)

>U35_14933 426 Hv_44K_v2
GCTTGCCCGCCCGCCCGCGCCGCCGCCGCCGCCTCCATCCGCAGGAGCCCCCTCCTCGCA
GGCGAGATGGTGTTCGTCAAGAACCAGAAGACCAGGGCGTACTCCAAGCGTTTCCAAGTC
AAGTTCAAGAGAAGGCGTCAGGGGAAGACCGACTACAGGGCAAGGCTGAGGCTCACGAAC
CAGGACAAGAACAAGTACAATACCCCCAAGTACCGCTTTGTCGTGCGATTTGTATCCTTT
GCAAAGTTTTATCATTATGATTATTTCTGTACTTGTCAATCATCTATATGCTGCTGCTTA
TGAGTACCATGGAGGCATGTTGTATCTCTTAACAATAGTACTTTAGACCAACAAGGATGT
CACTGCCCAAATTGTTTATGCTACCATTGCTGGTGATATCGTGATGGCTGCTGCCTACTC
CCATGA

Homology of Contig U35_14933 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None