barSeed - Barley Seed Development Database

Probe CUST_35636_PI390587928

Source Contig U35_14935

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35636_PI390587928	Hv_44K_v2	CCGTCCTCGTGTGCCTTCCCCGTCTTATCTACATATATATACTCCTGTGTATGTAGACAA	449	GeneList: darkolivegreen MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.227	0.296	0.713	1.962	1.788	2.388
Raw	5627.303	11013.450	24269.433	101433.433	32967.200	48091.500

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_60233.1	643	2e-24	551 - 610	100	60 / 60	plus	ABC01456 ABC32055 ABC49666
JLOC1	JLOC1_39258.1	927	8e-25	715 - 774	100	60 / 60	plus
Harvest21	ABC01457	699	3e-25	97 - 156	100	60 / 60	minus
Harvest21	ABC01455	531	3e-25	450 - 509	100	60 / 60	plus
Harvest21	ABC01449	731	3e-25	544 - 603	100	60 / 60	plus
Harvest21	ABC32055	488	1e-23	39 - 98	98	59 / 60	minus	ABC32055
Harvest35	U35_14935	531	3e-25	450 - 509	100	60 / 60	plus
Harvest35	U35_14934	752	3e-25	544 - 603	100	60 / 60	plus

Contig Sequence (531 bp)

>U35_14935 531 Hv_44K_v2
ATAACCAACTCGAGGGAGATGTCGTGCTGCGGAGGCAACTGCGGGTGCGGATCCGGCTGC
AAGTGCGGCAACGGCTGCGGAGGGTGCAAGATGTACCCTGGGATGGACGAGGGGGTGAGC
ACCACCGCCACCTCCTCCCAGGCCCTCGTCATGGGAGTGGCGTCCTCCAAGGGCAACGGG
CCCTCGTTCGAGGCCGCCGCCGCCGAGAACGGCGGGTGCAAGTGCGGCCCCAACTGCACC
TGCAACCCGTGCACCTGCAAGTGATCAGTCGAATCAACACATGAATCGCGAGTGTGTGTT
TCGTTTTTAATTGCCACCTACTAGAATAAGACGGGATCTATCGTATCGTAATCGTATCGA
GCTAGTCAACGGATTATGTGTACGTACCCCTTGTGGCTTGTACGGTGTTTTGTGTTGTGT
TGTCATGTGCTTCTCCTACCGCTTTAGTTCCGTCCTCGTGTGCCTTCCCCGTCTTATCTA
CATATATATACTCCTGTGTATGTAGACAATAATAATTTGGAGTTTCTGTCT

Homology of Contig U35_14935 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None