barSeed - Barley Seed Development Database

Probe CUST_35628_PI390587928

Source Contig U35_26914

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35628_PI390587928	Hv_44K_v2	TGTCATCAACCGTCGATGGTGACTCAGTGGTCTGTAAGAACTGCAGACGTCATATATCTA	701	GeneList: darkturquoise MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.376	0.584	1.222	2.002	0.956	1.040
Raw	66.976	165.763	298.193	803.929	129.100	154.935

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK365366	2028	2e-24	1358 - 1417	100	60 / 60	plus	None
MLOC	MLOC_1493.1	1889	2e-24	791 - 850	100	60 / 60	minus	None
JLOC1	JLOC1_913.1	1970	8e-25	1109 - 1168	100	60 / 60	plus
Harvest21	ABC24538	767	3e-25	702 - 761	100	60 / 60	plus
Harvest35	U35_26914	767	3e-25	702 - 761	100	60 / 60	plus

Contig Sequence (767 bp)

>U35_26914 767 Hv_44K_v2
ACATCCCATAGTTCCTTTAATTCAGGTGAAGTATGCAAGTTTGCCCAAAGGGACATATGC
GAAACTTAAGCCTGAAGGGGTAGGATTCTCAGATCTCCCCAACCATAGAGCTGTCCTTGA
AACGGCACTGCGCAATCACGCAACGCTATCTGAAAATGATGTTGTCATGGTGAACTATGG
ACAACTGCAGTATAAGTTGAAGGTTCTTGAGTTGAAGCCTGCATCAAGTGTTTCTGTGCT
GGAGACTGATGTTGAAGTTGACATTGAGGGACCAGATTCAGTTTTCGTCAATGAAGAAAA
TCAGCATGTGCTTGTGCCGCTTGAGACTGGGAAGATTGAATCTGGAGCTGTGGAAGAAGG
GAAGTTCAGGTACTACAAATTTTCCATCGAAGATGGTATTGCGGAGAAAGTTGCGTCTGG
CTGTGCAAATATTGAGGTTAAGATAGAGTCTGATACAAGTGGCGGTGACACTGATATTTA
TGTTTCAAGGCATCCTTTAGTATTCCCAACTCAGCACCGTCATGAGTGGTCTTCTCATGA
GATGGGATCTAAGGTTCTTATACTCAAACCAAGGGATGCTACTTTGGTCAGTGGCCTTTA
CAGTGTTGGTGTTTACGGTTTCAACGGCATAACAAAGTTCCAACTTTCTGTAGCCATCAA
GGATGTTATCAATAGCCAAAGGATCGGTGAGCAGGGTAGTGTGTCATCAACCGTCGATGG
TGACTCAGTGGTCTGTAAGAACTGCAGACGTCATATATCTAGCCGGA

Homology of Contig U35_26914 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g35040.1	570	8e-143	protein\|ZOS1-09 - C2H2 zinc finger protein, expressed
Brachypodium v1_2	Bradi2g40480.2	507	9e-148
Arabidopsis v10	AT4G15420.1	561	2e-93	Ubiquitin fusion degradation UFD1 family protein \| chr4:8823822-8825949 FORWARD LENGTH=561