barSeed
Links

Probe Details

Probe IDChipProbe Sequence (60 bp)Probe locationDifferentially Expressed
CUST_35601_PI390587928Hv_44K_v2TATATATGGCCTTTAAGACTCTGCAAGTTCCAACCAGTTTAGCAAGGCCAGACAGCTGCA93GeneList: None
MasterList: None



Probe Values

This probe has no recorded values for this experiment





Probe Sequence's BLAST hits in Barley Unigene Datasets

DatasetHitHit LengthE-valuePosition on Hit% IdentityMatchDirectionProbes on Sequence
MLOCMLOC_65780.221753e-221065 - 11239858 / 59plus ABC10888 ABC38207
MLOCMLOC_65780.113253e-22364 - 4229858 / 59plus ABC10888 ABC38207
JLOC1JLOC1_43304.314071e-22262 - 3209858 / 59plus
JLOC1JLOC1_43304.215961e-22468 - 5269858 / 59plus
JLOC1JLOC1_43304.115021e-22357 - 4159858 / 59plus
Harvest21ABC281496433e-2594 - 15310060 / 60plus
Harvest21ABC1088812675e-23158 - 2169858 / 59plusABC10888
Harvest35U35_290026433e-2594 - 15310060 / 60plus
Harvest35U35_464712675e-23158 - 2169858 / 59plus



Contig Sequence (643 bp)

>U35_29002 643 Hv_44K_v2
GGCCGACCGCCACTCCGATCCGCTGGCCTCCTCTGCTCCACCTGGAAATTTTCCAGACCA
AACAAAGGCTCATCACTGAAAGAGGAGCTCCAATATATATGGCCTTTAAGACTCTGCAAG
TTCCAACCAGTTTAGCAAGGCCAGACAGCTGCAGTTTCACTTCCTCCAACCCCAAGTCTT
ATTGCTATCACCCAAAACCTCACTCAAGACCGCAAGCAAGAATCGCCACGAAGAATCGCC
TTCAGAGTTCACCAGTACTCAAATGCAGAGCCAATCCGCACGGCTGCGTCGACGATGTTG
TCCAGTCCCGTCAGGATCATCAGACTACTGAGATCCCCATAGTCCTGCACCAGTCGGTCG
TTTTCCCTGGCCAGACGCTGCAGCTGCAGACGGTTGAGTTTAGATACCGCATCATGATGC
ACACACTACTGCTCCAGGAACGCCTCAGCTTCGGTATCATCTACTCCGGCAGGGAAGATA
GTAGGATGGCCGATGTTGGATGCATGGTCCATGTTGTCGAGTGCGACAAGCTCGTCGATG
ACCGCTTCTTCCTGACCTGCGTCGGCGGAGACCGGTTCCGTGTCCTGGAGGTCGTCAGAA
CAAAGCCCTATGTCATCGCAAGAATTCAGGTACTGACTGACAG



Homology of Contig U35_29002 to Model Species (E-value threshold 1e-50)

Pseudo-peptide datasetHitHit lengthE-valueDescription
Rice v7LOC_Os03g29540.23068e-54protein|ATP-dependent protease, putative, expressed
Brachypodium v1_2Bradi1g60130.12955e-71
Arabidopsis v10None