barSeed - Barley Seed Development Database

Probe CUST_35599_PI390587928

Source Contig U35_29005

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35599_PI390587928	Hv_44K_v2	GAGAAGCATATGCAGGAATTGCTTCGGTATGCCAGATTTGGATTATGGTGGGTCATACTA	568	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_36713.1	1985	2e-24	490 - 549	100	60 / 60	plus	None
MLOC	MLOC_36713.3	1714	2e-24	1118 - 1177	100	60 / 60	minus	None
MLOC	MLOC_36713.2	1616	3e-22	1298 - 1353	100	56 / 56	minus	None
JLOC1	JLOC1_23683.2	2013	8e-25	573 - 632	100	60 / 60	plus
JLOC1	JLOC1_23683.1	2801	8e-25	524 - 583	100	60 / 60	plus
Harvest21	ABC28153	649	3e-25	569 - 628	100	60 / 60	plus
Harvest35	U35_29005	649	3e-25	569 - 628	100	60 / 60	plus

Contig Sequence (649 bp)

>U35_29005 649 Hv_44K_v2
GCTTGGTAAAACCCAAAGCCTGAGCACGCAACAAAACAGAGCAAGCTTTGTTTTCATCTA
CTTTCTACTCAAAAGCATCCAGCTTTCCGGGGGGGAAAGAAAGGAGCGATTCCGTCTGCA
CCCTCCGACTCGCCGAGCTCGTGACCCCGCCTCCCCGCCGGACCCTGAGAAGCGGCCAGG
CGTTTCCGCGCCAACCGCCAAACGAGCTGCGGAGCTCGCACCTTCTCTTTCCACCCTTGG
TTTAAGTAGCCGTGGCGGCCTGCTCCGACCGGTGCGTGCTGCTCAGATCTACCGCGGCAG
AGGGGGAAGCCCGAGGTTCATGATGGAGCACACCGCCTTCGGCGAGGATCAGGCCATATC
CGACCTTCGCGATAAGCATCGCTTGGACCTGGAGAGTTTAACGCTGACATCACGGCCATT
CAAAACACTTGCATTATTTGTGCTAGCCATTGGACAGAATATAAGAAGCACATGTTCCTG
TGTTCTGAAAGAAGGTTCTCGGTTGAAATTCATAGTTCTGTTGCTTGGTGCCACCTGTGT
GCTTCTCTTGGTAACTAATGGCCCGCATGAGAAGCATATGCAGGAATTGCTTCGGTATGC
CAGATTTGGATTATGGTGGGTCATACTAGGGGTGGCTTCATCGATTGGA

Homology of Contig U35_29005 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None