barSeed - Barley Seed Development Database

Probe CUST_35598_PI390587928

Source Contig U35_29006

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35598_PI390587928	Hv_44K_v2	TATTTCGCAAGAATTTGGATTTCGTTCATGGCGCGGCGGCATTATTCGGAGGAGATTTTG	338	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_54525.4	1859	2e-24	343 - 402	100	60 / 60	plus	ABC16980
MLOC	MLOC_54525.2	3079	2e-24	1867 - 1926	100	60 / 60	plus	ABC10529 ABC16980 ABC46214
MLOC	MLOC_54525.3	1176	2e-24	366 - 425	100	60 / 60	plus	None
JLOC1	JLOC1_35099.1	3410	8e-25	1867 - 1926	100	60 / 60	plus
Harvest21	ABC28154	653	3e-25	339 - 398	100	60 / 60	plus
Harvest35	U35_29006	653	3e-25	339 - 398	100	60 / 60	plus

Contig Sequence (653 bp)

>U35_29006 653 Hv_44K_v2
GCAACGAGGATCCTCTGGAGCCTGGGTAACCCGAGCTCGCCGCTTTGCTCCCATCCCCCT
CTTCCTCCTCCCGCTGCCGCCATTGCTCCGGCTCCAAGCAAACGCCCGCTCCCTTGGTTC
GTTGTCCCGCCTAAGCGCTCATCCTTTCTCCTCGCCCTCACTTCTCCCCGCCGCCCAAGG
AAGGGGGAGGCAAATCTCGTAGGCGTGAACCCCGCCCGTCCGTCCCCAGCCCCTCCTCCC
CGTCCGCCTGCGTCATCGCGAATTATCGCTTCCTCGAATTACGTCGGTAATGCCTGCCGC
TTCTGTCTCGTATGCCTGTTGTTGCTGATCTGCATTACTATTTCGCAAGAATTTGGATTT
CGTTCATGGCGCGGCGGCATTATTCGGAGGAGATTTTGCCTGCGTTTTGCTGCATCTTTT
AGTAGAACGGCGGCGCGGGGCGTTCTTTCTCTCTGCTGCTGATACCATTTGAACCGGATG
CGGCTCTATTCACCTGCAATCTGTTTGCGGCGATCTGCCTCAAGTAGTATGTATGCTCAT
CCCAATCAGTTTCAAGGAGGACCCACACCCACACAGAGCATGGTCTTATGGAAGTGCTCC
CGACCGCAGTCAAGCCGCTCTCATATGACATTGGGCTTAGCTGATTCTTCTCG

Homology of Contig U35_29006 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None