barSeed - Barley Seed Development Database

Probe CUST_35596_PI390587928

Source Contig U35_29008

barSeed

Links

Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35596_PI390587928	Hv_44K_v2	TGGTTCAAGCGCATGTATTCCAAATGGTGGAATCTTGAAGCCTGCTGGACTTCCTTTACT	555	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK368928	2091	2e-24	684 - 743	100	60 / 60	plus	ABC18412
MLOC	MLOC_79155.4	2320	2e-24	1225 - 1284	100	60 / 60	minus	ABC18412
MLOC	MLOC_79155.5	1502	2e-24	475 - 534	100	60 / 60	minus	None
MLOC	MLOC_79155.1	2343	2e-24	1384 - 1443	100	60 / 60	minus	ABC18412
MLOC	MLOC_79155.2	2340	2e-24	1381 - 1440	100	60 / 60	minus	ABC18412
JLOC1	JLOC1_52743.4	2337	8e-25	845 - 904	100	60 / 60	plus
JLOC1	JLOC1_52743.3	2340	8e-25	845 - 904	100	60 / 60	plus
JLOC1	JLOC1_52743.2	2181	8e-25	692 - 751	100	60 / 60	plus
JLOC1	JLOC1_52743.1	2625	8e-25	686 - 745	100	60 / 60	plus
Harvest21	ABC28156	632	3e-25	556 - 615	100	60 / 60	plus
Harvest35	U35_29008	632	3e-25	556 - 615	100	60 / 60	plus

Contig Sequence (632 bp)

>U35_29008 632 Hv_44K_v2
GGGTCCGATCCAGCCCTACACGATGAACGGGGCAGCGGCGCCCGAGCCCACGGAGGCCCT
GGCCCCGTCCCCCCAGGCGCCGCTCGACTGGAGGTTCTCGCAGGTCTTTGGCGAGCGTGG
GGCCGGCGAGGACGTCCAGGATGTTGACATCATCTCAGCAATAGAGTTCAATAAATCAGG
ACATCATCTTGCCACTGGGGACAGAGGTGGCCGGGTTGTTTTGTTTGAAAGGACTGATGT
CAAAGATCATGTCCCTAGAAAAGATGCTGAGAAAGCCGATTATTCTATCAGCAGGCATCC
TGAATTTCGTTACAAAACCGAGTTTCAAAGCCATGAACCAGAGTTTGATTACCTTAAAAG
CTTGGAAATTGAAGAGAAGATTAACAAGATAAAGTGGTGCCAAGAAACGAATGGTGCATC
GTTTCTTCTGTCCACAAATGACAAAACGATAAAGTTTTGGAAGGTCCAAGAAAAGAAGGT
TAAAAAAATATGTGAGATGAATATGAACCCTTCAAATGCTCCTGCAAATGGTAGCCCTGC
TGGCAGTACTATGTGTGGTTCAAGCGCATGTATTCCAAATGGTGGAATCTTGAAGCCTGC
TGGACTTCCTTTACTTCGCCTGCCTGTGGTAG

Homology of Contig U35_29008 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os01g41630.1	508	1e-93	protein\|serine/threonine protein phosphatase 2A 55 kDa regulatory subunit B, putative, expressed
Brachypodium v1_2	Bradi2g42690.1	504	4e-105
Arabidopsis v10	AT1G17720.1	501	3e-71	\| Symbols: ATB BETA \| Protein phosphatase 2A, regulatory subunit PR55 \| chr1:6093949-6098065 REVERSE LENGTH=501