barSeed - Barley Seed Development Database

Probe CUST_35595_PI390587928

Source Contig U35_29009

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35595_PI390587928	Hv_44K_v2	TTAATTCACATTACCTAATGCAGTGTGATGTGGAATCTCCTGGGCCAAAGAGTTGGAAGA	569	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_26365.3	3528	2e-24	1106 - 1165	100	60 / 60	plus	None
MLOC	MLOC_26365.5	2555	2e-24	1419 - 1478	100	60 / 60	minus	None
MLOC	MLOC_26365.1	3352	2e-24	2192 - 2251	100	60 / 60	minus	None
MLOC	MLOC_26365.8	2628	2e-24	1412 - 1471	100	60 / 60	minus	None
MLOC	MLOC_26365.6	2642	2e-24	1523 - 1582	100	60 / 60	minus	None
JLOC1	JLOC1_17907.2	3231	8e-25	868 - 927	100	60 / 60	plus
JLOC1	JLOC1_17907.1	2941	8e-25	868 - 927	100	60 / 60	plus
Harvest21	ABC28157	632	3e-25	570 - 629	100	60 / 60	plus
Harvest35	U35_29009	632	3e-25	570 - 629	100	60 / 60	plus

Contig Sequence (632 bp)

>U35_29009 632 Hv_44K_v2
GACCGCCGGGAAGCGCATCGAACAGAAATTGGTGGATTACAACAAGGAGGCTGAGCGATT
CGGAGGATACTCATACGAGGAGCTATCTGAAGTTTCTCCAGATCACCGCTTCATTGCGTA
CACCATGTATGACAAAGATAAGGATTCCTTCACTTTACTGGTCAGGGATCTGGTGACGGG
CACACTATGCGATAAACCTCGTGCTGATCGGGTCTCAAATATTTCATGGGCCATGGATGG
GAAAGCACTGGTTTATATTGTTACGAATGAGGACAGAAGGCCATATAGGCTGTTTTGCAG
CATTATTGGATCAAATAAGGATGATATTCTTATATTGGAAGAACCTGATGAGAATATTTA
TTTGAACATCAGACATACTAAGGATTTTCGGTTTATAACGTTAAATGTCTTTTCAGACAC
GCACTCAAAGGTCTATTTGATAAGGGCTTCTGACCCCTTGTCCAGAATGACACTGGTATG
GGAAGGTGAATCCCAAGTTCATTGCATTGTGGAGCACCATCATGGACGCCTGTATTTATT
CACAGATGCTGCAAGAGAAGGTGTCCATGTTAATTCACATTACCTAATGCAGTGTGATGT
GGAATCTCCTGGGCCAAAGAGTTGGAAGAATG

Homology of Contig U35_29009 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	Bradi4g31947.1	786	2e-139
Arabidopsis v10	AT5G66960.1	792	2e-86	Prolyl oligopeptidase family protein \| chr5:26736209-26739493 REVERSE LENGTH=792