barSeed - Barley Seed Development Database

Probe CUST_3558_PI390587928

Source Contig U35_32465

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3558_PI390587928	Hv_44K_v2	ACGGTAAAAATCTGGGATGATCGCAGGACAGTGCCTTTATCTGTGATGAAACCGCATGAT	296	GeneList: None MasterList: None

Probe Values

This probe has no recorded values for this experiment

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_81213.2	4380	2e-24	1356 - 1415	100	60 / 60	plus	ABC15885
MLOC	MLOC_81213.1	4550	2e-24	1445 - 1504	100	60 / 60	plus	ABC15885
MLOC	MLOC_81213.3	3914	2e-24	810 - 869	100	60 / 60	plus	ABC15885
JLOC1	JLOC1_54040.2	4610	8e-25	1440 - 1499	100	60 / 60	plus
JLOC1	JLOC1_54040.1	4619	8e-25	1440 - 1499	100	60 / 60	plus
Harvest35	U35_32465	378	3e-25	297 - 356	100	60 / 60	plus

Contig Sequence (378 bp)

>U35_32465 378 Hv_44K_v2
GAAGGATTGAAATGGCCATCCAGATAGTAGGAGATGCTGGAACTTACCATCCAAGAATAT
GTTGGTACTCCCATAAGCAAGAAATTCTGTTTGTTGGAATAGGGAACTGTGTCTTGAAAA
TAGACACAACAAAAGTGGGAATAGGAAGAGACTTCAGTAAAGAAGAGCCTCTTAAATGCT
CACTTGATAAGCTCATTGATGGTGTGCACTTGGTTGGTAGACATGATGGGGATGTCACAG
ATCTGTCCTTATCTCAATGGATGACTACCCGTCTGGCTTCAGCATCAAAAGATGGCACGG
TAAAAATCTGGGATGATCGCAGGACAGTGCCTTTATCTGTGATGAAACCGCATGATGGTA
AAGCTGTNTATTCGGTTT

Homology of Contig U35_32465 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os06g19660.2	1188	6e-70	protein\|WD domain, G-beta repeat domain containing protein, expressed
Brachypodium v1_2	Bradi1g43097.1	1317	6e-73
Arabidopsis v10	AT3G13290.1	1340	8e-51	\| Symbols: VCR \| varicose-related \| chr3:4297529-4303113 FORWARD LENGTH=1340