barSeed - Barley Seed Development Database

Probe CUST_35587_PI390587928

Source Contig U35_17032

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35587_PI390587928	Hv_44K_v2	TTTTTTGAACACGAACTCTCATTGTGAACGCGAACGCGAACGAAGCCAATGAGATTACTC	594	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.389	1.358	1.050	0.969	0.525	0.485
Raw	475.421	729.723	497.075	727.283	137.461	136.021

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_42777.1	724	8e-25	610 - 669	100	60 / 60	plus
Harvest21	ABC06459	675	3e-25	595 - 654	100	60 / 60	plus	ABC06459
Harvest35	U35_17032	675	3e-25	595 - 654	100	60 / 60	plus

Contig Sequence (675 bp)

>U35_17032 675 Hv_44K_v2
GTTCTCCTTCCTCTCGCCCAATTTCCTCACCTGCCTCCGAGAAGAGAAAAGCAAACGAGA
CGCGAATCAGCGGCGGCGATGGCTCTCCCGGCGTCCAGCTCCACCCTCTCCCGCTTCCTC
TCCTCCCGCCGCATCCAGCCCGCCGACGTCACCGCCCTCGCCACCTGGGGCGTCGCCGCC
GGCAGCGCCGCCATCTACCTCGTCCAGCCATTTGACTGGATCAAGAAAACCTTCTTCGAG
AAGCCCGAGCCAGAGGCATGAGTGCTTATGGGCGTGCATGGCTGCAACTTTTGATGCGTA
CATTTCCAGGATGATTCTGAGTTTGGATGACCCAGCCAATAATATACAAGACCCTCGTGT
TCCCTTGTTTGATTTTCCATCCAGATGTAGGTTTCCTGTTGCGTTGCATGTAACCCTCGC
CATGGGAGGGGAATGATCATGTAAGTTTATTTTTCGTCACAGAGAAAAGAAACTGTGCTT
GTGTTCAAAAAAAAAAAAAAAAATTTCTTTTGCTAGTGTCACCGTCAACGCTGAGCAACA
TGGCTCTGAGCAGGAAAATCGTGCTCAGCTGTAGTGTTTTGTTATTCCTCGTGATTTTTT
GAACACGAACTCTCATTGTGAACGCGAACGCGAACGAAGCCAATGAGATTACTCTCCCAA
AAAAAAAAAAAAAAA

Homology of Contig U35_17032 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None