- Probe CUST_35578_PI390587928
- Source Contig U35_17036
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_35578_PI390587928 | Hv_44K_v2 | AGAAAGAGATCAAAGAACTGTATTTGCCTACCAGCTATCCTTGAAAGCGGATGAAAGAGA | 557 | GeneList: darkorange MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 1.231 | 0.970 | 1.897 | 1.891 | 0.571 | 0.860 |
| Raw | 42.954 | 51.492 | 92.072 | 143.666 | 15.420 | 24.889 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| MLOC | AK250611.1 | 1355 | 2e-24 | 39 - 98 | 100 | 60 / 60 | plus | ABC09208 ABC10443 ABC43170 |
| MLOC | MLOC_37287.3 | 1590 | 2e-24 | 721 - 780 | 100 | 60 / 60 | plus | ABC09208 ABC10443 |
| MLOC | MLOC_37287.4 | 2594 | 2e-24 | 1725 - 1784 | 100 | 60 / 60 | plus | ABC09208 ABC10443 |
| MLOC | MLOC_37287.2 | 2565 | 2e-24 | 1924 - 1983 | 100 | 60 / 60 | plus | ABC09208 ABC10443 |
| MLOC | MLOC_37287.7 | 2125 | 2e-24 | 1591 - 1650 | 100 | 60 / 60 | plus | ABC09208 ABC10443 |
| MLOC | MLOC_37287.5 | 1742 | 2e-24 | 873 - 932 | 100 | 60 / 60 | plus | ABC09208 ABC10443 |
| MLOC | MLOC_37287.6 | 1281 | 2e-24 | 646 - 705 | 100 | 60 / 60 | plus | ABC09208 ABC10443 |
| MLOC | MLOC_37287.1 | 1539 | 2e-24 | 667 - 726 | 100 | 60 / 60 | plus | ABC09208 ABC10443 |
| JLOC1 | JLOC1_24133.9 | 1454 | 8e-25 | 792 - 851 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_24133.8 | 2443 | 8e-25 | 1571 - 1630 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_24133.7 | 1607 | 8e-25 | 735 - 794 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_24133.6 | 1538 | 8e-25 | 666 - 725 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_24133.5 | 1629 | 8e-25 | 757 - 816 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_24133.4 | 1690 | 8e-25 | 818 - 877 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_24133.3 | 1308 | 8e-25 | 646 - 705 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_24133.2 | 1438 | 8e-25 | 776 - 835 | 100 | 60 / 60 | plus | |
| JLOC1 | JLOC1_24133.1 | 1524 | 8e-25 | 652 - 711 | 100 | 60 / 60 | plus | |
| Harvest21 | ABC10443 | 2055 | 3e-25 | 732 - 791 | 100 | 60 / 60 | plus | ABC10443 |
| Harvest35 | U35_17036 | 617 | 3e-25 | 558 - 617 | 100 | 60 / 60 | plus | |
| Harvest35 | U35_17034 | 2152 | 3e-25 | 325 - 384 | 100 | 60 / 60 | plus |
Contig Sequence (617 bp)
>U35_17036 617 Hv_44K_v2 CCTCTTTTTCTCCCTCCACAGATCTAGGGTTTCCACCTCGTCATCGCCATGGACTTCGAC GAGTACGAGTACCTCGAGAAGACGGTCGAGGCCTCCGCCCCGGCCCCGGCCAACGGATCC GAGGGGAAGGAGCGCAGCTCCCGCCGCCGGAGCAGCGCCGGCGACGGAGAGGACCGCGAC GACGGCGAGCGCAGGTCCAAGCGCTCTCGCTCCGAGCACCGCGACCGCGACCGCGACAGG GAGCGGGACCGCGACCGTGACCCTGAGAGCCGGGAGCGCCACCGCAGCAGCCGGGAGCGC CGGGACCGCGACCGGGACCGGGACCGGGACGTGAGGGAGAAGGAGAGGCTGAGCAGGGAG GGCGAGCGGGAGAGGAGGAGCCGCGACCATGACCGCGAGCGGGAGAAGGAGAAGGAGAGG GAGCGGAGGAGCCGCAGCCGGTCGGAGCGTCGCCGCGACGATGACGAGCGTGAGCGCGAG CGCTTCCGTGAGCGTGACTACCGTGACCGCGACGTCAGACGTAGGAAAGAAGACGGTGCT GAACCTGAAGCAGATCCAGAAAGAGATCAAAGAACTGTATTTGCCTACCAGCTATCCTTG AAAGCGGATGAAAGAGA
Homology of Contig U35_17036 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |