barSeed - Barley Seed Development Database

Probe CUST_35577_PI390587928

Source Contig U35_17037

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35577_PI390587928	Hv_44K_v2	TAATGTAAGACTTGAGCGTATATCCACTTATTAAATTCCCGGCTCGCCAGAAGCTGCTGC	1576	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.708	1.378	1.070	0.850	0.350	0.376
Raw	68.178	89.451	58.047	74.117	9.778	12.296

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
JLOC1	JLOC1_44945.1	1033	4e-23	783 - 842	98	59 / 60	plus
Harvest35	U35_17037	1657	3e-25	1577 - 1636	100	60 / 60	plus

Contig Sequence (1657 bp)

>U35_17037 1657 Hv_44K_v2
GGCACACATCTAGCAGCGGCCACGTCTCCACATATTGGAGAGAGGAGCAGAGAAACCCCT
CTTCCCCTTCTTCAATCTTCATCCTCCCCTTCCGCTCCTAGCTAGGGTTTTGCCTGCCGC
CCGGCGCAGCCAGCGCGATGGAGCCCACCTCGTCGTCGGCGGTGGCGCGGCAGACGTGGG
AGCTGGAGAACAACATCCCGGCGGCCGCCTCCGACCCGGACGCCATGGACGCGATCTACC
GCTACGACGAGGCGGCCAACGCGCGGGCCCACCAGGAGAAGCCCTGGGCCACCGACCCGC
ACCACTTCCGCCGCGCCAGGATCTCCGCCCTCGCGCTCCTCAAGATGGTCGTCCACGCCC
GCGCCGGCGGCACCATCGAGATCATGGGCCTCATGCAGGGCAAGTTCGAGGGCGACTCCA
TCATCGTCATGGACGCCTTCGCGCTCCCCGTCGAGGGCACCGAGACCAGGGTCAACGCCC
AGGCCGACGCCTACGAGTACATGGTCGAGTACTCCACCATCAACAAGCAGGCTGGAAGGT
TGGAAAATGTGGTTGGGTGGTACCACTCACATCCTGGTTATGGATGCTGGCTGTCAGGCA
TTGATGTTTCAACTCAGATGCTTAATCAGCAGTTTCAAGAACCATTCTTGGCTGTTGTGA
TAGACCCTACAAGGACTGTTTCTGCTGGTAAAGTGGACATTGGAGCTTTTAGGACATATC
CAAAAGATTACAAGCCTCCGGATGAGCCCGTGTCTGAGTATCAGACCATACCACTCAACA
AGATAGAAGATTTTGGTGTTCACTGCAAACAGTACTATTCTTTGGATATAACCTATTTCA
AGTCATCCCTGGACTCTCACCTCCTTGATCTACTCTGGAACAAGTACTGGGTCAACACAT
TGTCTTCGTCACCACTTCTGGGCAACAGGGATTATGTTGCTGGACAAATCTTTGATTTAG
CTGATAAACTAGAGCAAGCTGAAGGGCAACTGGCACACAGTCGATTTGGCATGCTTATGC
CATCACAGCGAAAGAAAGAGCAAGAGGAGTCACCACTGGCTAAGGTAACCCGGGATAGCT
CCAAAATCACTGCTGAACAGGTTCATGGTCTCATGTCACAGGTCATCAAGGACATCCTCT
TCAACTCTGTGCACCCGTCAAGCAAAAGCAAGGCAAGCGCGAGCGGAGCCGCTCCAGATT
CACCTGTGCCCGAGCCCATGGTTGAAGCTTGATACTTCCAGCGAAATACCTTCACATTTT
GATGCTGGATTTTAACTCGCTGTCTGCTCCGGAGCTGTTTCATCGCTTCAAATGTTGTCC
AGCATAGTTATCTGATACAAACTGTCGTCAGTTAAGAGCTTCATCTGTCAAATCAGAATT
GGCATGTAATTACGAGTTACCTTTTGCATCTAGTGCTGCCACTGAGGATCTGTGAATTAC
CTTTAGGAGTTTGAAGTCACTTGGACGAACTATGCGGCTATATATTCAGTGGATGTTGAC
GGCCTTCCATGATTGATGGGCACAATCTACCAATGTTCAAAGTCTCTATCAAACAGTGGG
TTCAAATTTATTCACATAATGTAAGACTTGAGCGTATATCCACTTATTAAATTCCCGGCT
CGCCAGAAGCTGCTGCGCCCCCAAAAAAAAAAAAAAA

Homology of Contig U35_17037 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os04g56070.1	361	0.0	protein\|COP9 signalosome complex subunit 5b, putative, expressed
Brachypodium v1_2	Bradi5g24470.1	361	0.0
Arabidopsis v10	AT1G22920.1	357	3e-180	\| Symbols: CSN5A, JAB1, AJH1 \| COP9 signalosome 5A \| chr1:8109882-8111895 REVERSE LENGTH=357