- Probe CUST_3556_PI390587928
- Source Contig U35_32466
Probe Details
Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
---|---|---|---|---|
CUST_3556_PI390587928 | Hv_44K_v2 | TTGGAGTTGCTGCTGATGCTCCTGCTCTCGTCGGCTTCCCATGCCCGGGACATCATCTCG | 37 | GeneList: mediumpurple3 MasterList: None |
Probe Values
3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
---|---|---|---|---|---|---|
Normalized | 1.402 | 1.099 | 1.068 | 0.681 | 0.738 | 0.938 |
Raw | 46.763 | 50.423 | 46.154 | 38.828 | 17.335 | 24.622 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
---|---|---|---|---|---|---|---|---|
MLOC | AK366576 | 3219 | 2e-24 | 160 - 219 | 100 | 60 / 60 | plus | ABC13418 |
MLOC | MLOC_37943.2 | 1973 | 7e-23 | 1635 - 1694 | 98 | 59 / 60 | minus | None |
MLOC | MLOC_37943.1 | 1997 | 7e-23 | 1633 - 1692 | 98 | 59 / 60 | minus | None |
JLOC1 | JLOC1_24620.1 | 1812 | 4e-23 | 1475 - 1534 | 98 | 59 / 60 | minus | |
Harvest35 | U35_32466 | 330 | 3e-25 | 38 - 97 | 100 | 60 / 60 | plus |
Contig Sequence (330 bp)
>U35_32466 330 Hv_44K_v2 ACTTGCCGCGGCGATGGCCAGCCACCAGCTACGCCTCTTGGAGTTGCTGCTGATGCTCCT GCTCTCGTCGGCTTCCCATGCCCGGGACATCATCTCGCCGGGCCAGCCGCTCAGGGGCAA CGACACACTGGTCTCGTCCGGCGCCGGCAGTTTCGTGCTGGGCTTCTTCACGCCGCCGGG CTCCAACAACACCTACGTCGGGGTGTGGTACGCCAAGGTCTCCGTCCGCACCGTCGTCTG GGTCGCCAACCGCGCCGACCCCGTCCCGGGCCCGGTGGAGCGCAACGCCCGCGCGACCCT GTCCGTCTCCGCCGACGGCNCGCTCTCCGT
Homology of Contig U35_32466 to Model Species (E-value threshold 1e-50)
Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
---|---|---|---|---|
Rice v7 | None | |||
Brachypodium v1_2 | None | |||
Arabidopsis v10 | None |