barSeed - Barley Seed Development Database

Probe CUST_35566_PI390587928

Source Contig U35_29015

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35566_PI390587928	Hv_44K_v2	ATTTTGAGCAGTTTGGCACGATCACCGATGTTGTCGTGATGTATGATCACAACACACAGC	603	GeneList: floralwhite MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	0.597	0.456	1.204	1.862	0.870	1.081
Raw	26.130	27.922	70.715	163.956	29.530	38.418

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_74552.1	1993	2e-24	1307 - 1366	100	60 / 60	minus	ABC20899
MLOC	MLOC_74552.2	1878	2e-24	1307 - 1366	100	60 / 60	minus	ABC20899
JLOC1	JLOC1_49686.2	2032	8e-25	667 - 726	100	60 / 60	plus
JLOC1	JLOC1_49686.1	2076	8e-25	711 - 770	100	60 / 60	plus
Harvest21	ABC28166	665	3e-25	604 - 663	100	60 / 60	plus
Harvest35	U35_29015	665	3e-25	604 - 663	100	60 / 60	plus

Contig Sequence (665 bp)

>U35_29015 665 Hv_44K_v2
GGTGGTGCCGTGGTATGGCCTTTGAGGTTGNCCATGCCTCCCCCAAGATCCTAGGCAGCC
AGCTCGAGACCCCTTCCCTGGATCAACCGGTGCGCCCTGCCCCTGAATTCACCGCTCTCT
CTGCGCCCCGCCGCGCCAAATTCTGCTCCATTTTGGTGCCCAATTCGTGCGCTTTCGATC
GGTTCTTGGAGCCGGGCATTCCTGGTTGGAAGTAGGAGCCCGAACCGGAGATGGAGGCGG
ATGCCGGGAAGCTGTTCATCGGTGGCATCTCGTGGGACACCAACGAGGACCGCCTCCGGG
AGTACTTTGAGAAGTACGGGGAGGTGGTGGAGGCCGTCATCATGCGCGACCGAGCCACCG
GCCGCGCCCGGGGCTTCGGGTTCATCGTGTTCGCCGATCCAGCAGTTGCAGAGCGTGTAA
TAATGGAGAAGCATATGATCGATGGCCGGATGGTGGAGGCCAAGAAAGCTGTCCCTAGAG
ACGATCAGCAAGCTCTTAGCAAGAGTGGCGGCAGTGCTCATGGATCACCAGGGCCCAGTC
GCACCAAGAAGATTTTCGTCGGGGGTCTTGCATCCACCGTGACAGAGGCAGACTTCAGGA
CCTATTTTGAGCAGTTTGGCACGATCACCGATGTTGTCGTGATGTATGATCACAACACAC
AGCGT

Homology of Contig U35_29015 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os11g41890.1	468	2e-80	protein\|RNA recognition motif containing protein, putative, expressed
Brachypodium v1_2	Bradi4g12200.1	464	3e-82
Arabidopsis v10	AT5G55550.3	460	3e-67	RNA-binding (RRM/RBD/RNP motifs) family protein \| chr5:22502135-22503658 REVERSE LENGTH=460