barSeed - Barley Seed Development Database

Probe CUST_3555_PI390587928

Source Contig U35_18173

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_3555_PI390587928	Hv_44K_v2	ATGTAAGTCTGATGCGCTTTCCTTTTGGAACTTTAGTTTTACCAGTTTGTAGTTTGTGTT	440	GeneList: yellow MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	2.399	2.133	0.816	0.869	0.509	0.873
Raw	140.573	200.205	64.404	117.436	22.093	42.236

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_66827.2	2470	7e-23	2404 - 2463	98	59 / 60	plus	ABC11308
MLOC	MLOC_66827.1	2475	7e-23	2334 - 2393	98	59 / 60	plus	ABC11308
JLOC1	JLOC1_44078.2	2013	4e-23	1871 - 1930	98	59 / 60	plus
JLOC1	JLOC1_44078.1	2535	4e-23	2393 - 2452	98	59 / 60	plus
Harvest21	ABC11308	925	1e-23	849 - 908	98	59 / 60	plus	ABC11308
Harvest35	U35_18173	601	3e-25	441 - 500	100	60 / 60	plus
Harvest35	U35_18172	1456	1e-23	994 - 1053	98	59 / 60	plus

Contig Sequence (601 bp)

>U35_18173 601 Hv_44K_v2
GCCGAGCTGTGCAGTGATCCGAAGGCGAGGAGGTACATCCAGGATGAGCTGAACCAAACC
GGCAAGAAACTCGGGTTGAGAGGATNTGAGATGCTGAGGGCCGTTCACCTGGAGCCAGTG
CCATTCAGCATAGACAAGGACCTGATCACTCCAACTTTCAAGCTCAAGAGGCCCCAGCTT
CTTAAACATTACAAGGATCGCGTTGATCAGCTGTACAAGGATGCCAAGATGGGAACTGCA
CAATAGAAAACGATGCTTAAAATCAGCCAGCGTATACTATGATCAGCTTTCTGAATGTTT
CCTCAAGAGTCAAAACTAGTATGATACTATGATGTAGCAACGGTAAGTAAGTTGGTTACG
GCTCGAGGCGGTGAAACTTTGTACCACCACTACTGCATACATATGCTTCGTCTGTCATTC
AAGACCTGGATATCCCAGTGATGTAAGTCTGATGCGCTTTCCTTTTGGAACTTTAGTTTT
ACCAGTTTGTAGTTTGTGTTATACCAGATGATTTATCGATATGAAATCGGAGGGGGCGGC
CTCTGTTTCATTCAAAAAATAAATTCAAGACCCGGATCCAGCATAAAAAAAAAAAAAAAA
A

Homology of Contig U35_18173 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None