- Probe CUST_35559_PI390587928
- Source Contig U35_31333
Probe Details
| Probe ID | Chip | Probe Sequence (60 bp) | Probe location | Differentially Expressed |
|---|---|---|---|---|
| CUST_35559_PI390587928 | Hv_44K_v2 | GCCGTCTCGCCCTATCGCTTGTGTAACCTCTCTTGTAAACACCCACTACCACTGAAAAAA | 382 | GeneList: black MasterList: None |
Probe Values
| 3 dpa | 4 dpa | 5 dpa | 6 dpa | 7 dpa | 8 dpa | |
|---|---|---|---|---|---|---|
| Normalized | 0.515 | 0.413 | 1.025 | 4.316 | 24.818 | 17.716 |
| Raw | 14.877 | 16.248 | 36.778 | 137.513 | 485.281 | 389.577 |
Probe Sequence's BLAST hits in Barley Unigene Datasets
| Dataset | Hit | Hit Length | E-value | Position on Hit | % Identity | Match | Direction | Probes on Sequence |
|---|---|---|---|---|---|---|---|---|
| Harvest21 | ABC31501 | 448 | 3e-25 | 383 - 442 | 100 | 60 / 60 | plus | ABC31501 |
| Harvest35 | U35_31333 | 448 | 3e-25 | 383 - 442 | 100 | 60 / 60 | plus |
Contig Sequence (448 bp)
>U35_31333 448 Hv_44K_v2 GGCGCCGCTTGCCTCCCCAAACAACTCGGCATATACTAACGGCTACCACTCACCCGCACC GGCCGCTCCCCTCTCTCCCTCTCCCCAGTCGAATCCGTCTCCCGTGACCCCGCTGAACCT GAACGCCGTGCCCGCTGCTGCGCCGCCGATGGTGTCGCCGAACTTCTCTAACCTCGGCAT GCCTCCTCCGCCGCCCCCTGGGGGTGAGGAGATCGAACCCATGGCCCCGCCATCGCCGAA ACCGATGCAGGAGGTATCATGGTCCGCACCTGCAGGGACTCCCGGAGGCCCTGCCGCTGC CCCTGTGCCCGCACCAGTCACATCGCTTACGTGCTGCTCTACCGCAGCGTGAAGGGCCTG TGAGCTCGATGGCTCTCGTATTGCCGTCTCGCCCTATCGCTTGTGTAACCTCTCTTGTAA ACACCCACTACCACTGAAAAAAAAAAAA
Homology of Contig U35_31333 to Model Species (E-value threshold 1e-50)
| Pseudo-peptide dataset | Hit | Hit length | E-value | Description |
|---|---|---|---|---|
| Rice v7 | None | |||
| Brachypodium v1_2 | None | |||
| Arabidopsis v10 | None |