barSeed - Barley Seed Development Database

Probe CUST_35546_PI390587928

Source Contig U35_17047

barSeed

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35546_PI390587928	Hv_44K_v2	TCGGAATTAACTGATGGAGGGAGTAATACAAATTGTATTCTGGGTTCACAACATATATAG	1136	GeneList: darkslateblue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.403	1.634	1.203	0.886	0.539	0.618
Raw	117.901	204.550	138.162	144.563	33.620	42.512

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	MLOC_52082.2	2152	2e-24	1866 - 1925	100	60 / 60	plus	ABC07320
MLOC	MLOC_52082.1	1259	2e-24	1182 - 1241	100	60 / 60	plus	ABC07320
JLOC1	JLOC1_33325.1	1464	8e-25	1064 - 1123	100	60 / 60	plus
Harvest21	ABC07320	1226	3e-25	1123 - 1182	100	60 / 60	plus	ABC07320
Harvest35	U35_17047	1240	3e-25	1137 - 1196	100	60 / 60	plus

Contig Sequence (1240 bp)

>U35_17047 1240 Hv_44K_v2
AAGCCTCTCCCCTCCTCCCCCATCCCATCCCAGTCAGCCAAACGCCCGTGACTTCGTCCG
CGGACCTTGCCTCGCTCTTCGATTCCCGCTCCGATCTCCGGCCATGGCCGCGCGGCGCCC
CGGATCCCCTGCCCCCAGATGCCTGCCCCCCTCCGCGCTCCTCCTCCTGGCTGCCGTCCT
CTTCGCGTCCTCGCCGTCGGCGCGCGCCCTCCGGTTCGACCTCGAGTCCGGCCACACCAA
GTGCATCTCCGACGAGATCAAGGTCGACTCCATGGCCGTCGGCAAGTACAGCGTCGTCGG
CCCCGACCCCAGCTACCCCGACGCCCAGCTCCCCGATTCGCACCGCGTCTCCCTCAGGGT
GACGTCGCCGTACGGGAACAGCATGCACTACTCCGAGAACGTGCAGTCGGGGCACTTCGC
CTTCACGGCTGTTGAGGCCGGGGACTACCTGGCCTGCTTCTGGGCGCCTGACCACAAGCC
ACCCGTCACCGTCACCTTCGAGTTCGACTGGAAGAGCGGCGTCACGGCCAAGGACTGGTC
CAACGTCGCCAAGAAGGGCAAGGTCGATATGATGGAACTAGAGCTGAAGAAGCTAGAGGA
TACCATCCAAGCTATCCATGAAGAAATGTTTTATCTACGCGAAAGGGAGGAGGAAATGCA
GAACATCAACAGGCAGACAAACTCGAGGATGGGGTGGCTGAGTTTCCTCTCGCTTGGCAT
CTGCTTGTCCGTGGCAGGGCTGCAGCTGTGGCATCTGAAGACCTTTTTCGAGAGAAAGAA
GCTGCTGTAGTTTTCCCAATGATCACAAACAAATCGTTGCGAATTAGGGTATATTGTTTC
TGCCAGCTATTAACTTATGTTTCCGAGCGAATACTCGAACCTTCATTAAGAAACCATGGT
CGTCATACTTGTGAAATGCCTTTCTCTGCCCTAGCTTCTGTCCAATGAAATACAGTTGTA
AAATGTTTCCTCTTTTTGATGATTTCATATGATGTAACGTGTTTTGTTTTTGTAGAGCTG
AGTAGAGCCACATCGTTGCTGCTGTTATGAGCACTGTTCCTTTTAGCGAGGGTCGGCAAC
TTTGCCAACCAAATACTGCTACCTCTGTTTGGATTTTTATTTTTTTTGGAATTCGTTCGG
AATTAACTGATGGAGGGAGTAATACAAATTGTATTCTGGGTTCACAACATATATAGCATA
ATAAAGAACACGCGATTTTACTAAAAAAAAAAAAAAAAAA

Homology of Contig U35_17047 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	LOC_Os07g43890.1	231	8e-111	protein\|emp24/gp25L/p24 family protein, putative, expressed
Brachypodium v1_2	Bradi1g20400.1	216	7e-118
Arabidopsis v10	AT1G26690.1	214	4e-75	emp24/gp25L/p24 family/GOLD family protein \| chr1:9224299-9225682 REVERSE LENGTH=214