barSeed - Barley Seed Development Database

Probe CUST_35544_PI390587928

Source Contig U35_43311

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Probe Details

Probe ID	Chip	Probe Sequence (60 bp)	Probe location	Differentially Expressed
CUST_35544_PI390587928	Hv_44K_v2	CTATAACAGATGATGATGTCATTGAGAAAAGCAACTTGAGTCGGCAATTCCTGTTTCGTG	144	GeneList: blue MasterList: None

Probe Values

	3 dpa	4 dpa	5 dpa	6 dpa	7 dpa	8 dpa
Normalized	1.545	1.148	1.254	0.669	0.613	0.383
Raw	39.788	43.062	43.127	33.420	11.626	8.133

Probe Sequence's BLAST hits in Barley Unigene Datasets

Dataset	Hit	Hit Length	E-value	Position on Hit	% Identity	Match	Direction	Probes on Sequence
MLOC	AK363409	3542	2e-24	1616 - 1675	100	60 / 60	plus	ABC08053 ABC10412
MLOC	MLOC_34537.1	3924	2e-24	2107 - 2166	100	60 / 60	minus	ABC08053 ABC10412
JLOC1	JLOC1_22281.1	3936	8e-25	1761 - 1820	100	60 / 60	plus
Harvest21	ABC39832	286	3e-25	145 - 204	100	60 / 60	plus
Harvest35	U35_43311	286	3e-25	145 - 204	100	60 / 60	plus

Contig Sequence (286 bp)

>U35_43311 286 Hv_44K_v2
TTTTTTTTTTTTTTTTTGGTTCTAAGCTTCAGAAGAAGATGCGAGACTCTAATATTTTTG
TTGTGGGATCTGGTGCTCTTGGATGTGAATTCTTGAAGAACTTTGCTTTAATGGGGGTTT
CTTGTGGCCGTAAAGGGAAGTTAACTATAACAGATGATGATGTCATTGAGAAAAGCAACT
TGAGTCGGCAATTCCTGTTTCGTGATTGGAACATTGGACAGGCAAAATCTACAGTAGCTG
CTACAGCTGCTAGTGCTATCAACTCCAACTTGCATATTGATGCTCT

Homology of Contig U35_43311 to Model Species (E-value threshold 1e-50)

Pseudo-peptide dataset	Hit	Hit length	E-value	Description
Rice v7	None
Brachypodium v1_2	None
Arabidopsis v10	None